Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3978 ATGAGCAGCAAGAGAGATACATGGCTTCTTACTGGAGTTATTGTAGCAATTGCATTGATAATGATTATTATTGCATCCATCTTGATTCGTAAACTTCTCAAATCAACCCACCCTAAGAATAAAGCATTGGGGGAAGTTCTGTTGAAGAAAAATGCTTGTCCAAGAGTTCCTCTCAAAGAAGTGCACTCTGCCACAAACCATCTGAATGAAATGAACGTCATTGGTGAAGGAACATTTGGGAAGGTTTATGGAGGCGCGATGACAAATAATCAACCTGTTGCAATAAAGCACATCATCAATGATGATGAAAGCATGGAGACTTTTGTCAGAGAAATTACAAACTTATCACACGTTAGACATCCAAATCTCGTCGCTTTGTTGGGTTGCTGTGTTGAGGGAGATGAATGTTTCCTTGTCTATGAACTGTGCCCTAACGGGAGTCTTTCAGAGTGGCTGTTTGGCACGAACAAGGTTCTGTCTTGGATACAGAGGCTTAATATTGCAATTGATACTGCAAAAGGCCTTTGGTTCCTTCATACATATCCACAAGGCTGCATCGTTCACCGTGATGTCAAGCCAACAAACATTCTCCTGGGGCCGAAGTTTGAAGCAAAGCTATCAGATTTTGGACTCTCTAAAGTTTTAGAGGTGGGTGAAACATATGTTAGCTCAGAAGTGAGAGGAACTTTTGGGTATGTTGATCCTGAGTACCAAAGTAACCGCCACGTAAATTCATCTGGCGATGTCTACAGCTTCGGCGTGGTACTTCTGCAGATCCTCTCTGGGAAGAAGGCTATAAATTTGAAACTCAAGAAACCCATGACTCTGGATAAAATGGCAAAAGCTCTCACAAGGGGTGGCAGCATGACAGAATTTGTTGATCCTAAACTTCAAGGAAAGTACTCAGAAGAAGCATTTGATTTTACCCTTCATCTTGCTCTATCATGCACAGCCCTTAACCAACAACGTCCGTCCATGGAGCAGGTTGTCACAAGATTGGAAGAGGCCCTACTAATTTCAATGGAGAAAGTCTCTGCAACAGACATTTCAGTGGACAATCCTTCAATTCTATGA 1074 0.4209 MSSKRDTWLLTGVIVAIALIMIIIASILIRKLLKSTHPKNKALGEVLLKKNACPRVPLKEVHSATNHLNEMNVIGEGTFGKVYGGAMTNNQPVAIKHIINDDESMETFVREITNLSHVRHPNLVALLGCCVEGDECFLVYELCPNGSLSEWLFGTNKVLSWIQRLNIAIDTAKGLWFLHTYPQGCIVHRDVKPTNILLGPKFEAKLSDFGLSKVLEVGETYVSSEVRGTFGYVDPEYQSNRHVNSSGDVYSFGVVLLQILSGKKAINLKLKKPMTLDKMAKALTRGGSMTEFVDPKLQGKYSEEAFDFTLHLALSCTALNQQRPSMEQVVTRLEEALLISMEKVSATDISVDNPSIL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3978 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Prci1g3978 357 SUPERFAMILY Protein kinase-like (PK-like) 51 333 IPR011009 -
Prci1g3978 357 PIRSF ILK 5 346 - -
Prci1g3978 357 Pfam Protein kinase domain 70 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g3978 357 SMART serkin_6 68 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g3978 357 ProSitePatterns Protein kinases ATP-binding region signature. 74 96 IPR017441 GO:0005524
Prci1g3978 357 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 10 335 - -
Prci1g3978 357 ProSiteProfiles Protein kinase domain profile. 68 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g3978 357 FunFam probable receptor-like protein kinase At5g59700 143 351 - -
Prci1g3978 357 Gene3D Phosphorylase Kinase; domain 1 30 142 - -
Prci1g3978 357 Gene3D Transferase(Phosphotransferase) domain 1 143 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3978 Prci-Chr1 55200877 55202903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3978 5 356 Receptor kinase-like Gene Family AT1G07650 38.162 1.97e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Prci1g3978 Pkinase 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3978 - - aprc:113867593 530.406