Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3973 ATGGAGGCCGGCCGTCTTTTCTTTGGCCCCTCCGTTTGCCGCGGGAACATGCTGTTTCTCGGGAATGGTGATCCAGCTTATCGAGGAGGATCGATTATAAGCTTGGACGAAAGCTCAAAGAAACGACCATTTTTCAGGTCAGCGGATGAACTGTTCGATGAGGAATATTACGATGAGCAGCTGCCGGAGAAGAAGCGACGCCTCACTTCCGCGCAGGTGCTTCTGCTGGAGAAAAGCTTTGAAGAAGAGAACAAGCTGGAGCCGGAACGGAAAATCCAGTTGGCCAAGAAGCTTGGATTGCAGCCAAGACAGGTGGCTGTGTGGTTCCAAAACCGCAGGGCCCGTTGGAAAACCAAGCAAATTGAAAGGGATTATGATGTTCTCAAGTCTTCCTACGACGCTCTCCTTTCAAAGTACGACTCTATCCTCAAGGACAATGAAAAGCTCAAATCAGAGGTGGTAGCCTTAAACGAGAAGCTTCTAGCTAGGGAGATGCCACGAGAACCATTACTTGAAGAAAAGGCCGATCCACTTATAATGGAGCCAGCCCAAATGCCTGCCCTACCATTCAACGTAAAGGTGGAGGACCGTCTCAGCAGTGGGAGTGGTGGAAGTGCGGTGGTGGACGAGGATGCTCCACAGCCTGTCTTGGACAGCGTTGATTCCTACTTTGCAACTGAGAACATCGGTGGGTGCGTGGCTGGGGTCAGCGGGGTTCCGTCGGAGGAGGACGATGGTAGCGACGATGGCAGGAGTTACTTCTCTGACGTGTTTGTGGCCCCTGAATCCGAGAACCAAAACCATGAGGAGGGAGAGGCGTTGCATTGGTGGGTGTGGTCTTAA 843 0.5219 MEAGRLFFGPSVCRGNMLFLGNGDPAYRGGSIISLDESSKKRPFFRSADELFDEEYYDEQLPEKKRRLTSAQVLLLEKSFEEENKLEPERKIQLAKKLGLQPRQVAVWFQNRRARWKTKQIERDYDVLKSSYDALLSKYDSILKDNEKLKSEVVALNEKLLAREMPREPLLEEKADPLIMEPAQMPALPFNVKVEDRLSSGSGGSAVVDEDAPQPVLDSVDSYFATENIGGCVAGVSGVPSEEDDGSDDGRSYFSDVFVAPESENQNHEEGEALHWWVWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3973 280 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Prci1g3973 280 CDD homeodomain 64 120 IPR001356 GO:0003677
Prci1g3973 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 203 IPR045224 GO:0003700
Prci1g3973 280 Coils Coil 132 159 - -
Prci1g3973 280 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Prci1g3973 280 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Prci1g3973 280 SUPERFAMILY Homeodomain-like 64 130 IPR009057 -
Prci1g3973 280 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Prci1g3973 280 Gene3D - 58 125 - -
Prci1g3973 280 SMART HOX_1 62 123 IPR001356 GO:0003677
Prci1g3973 280 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Prci1g3973 280 Pfam Homeobox associated leucine zipper 119 160 IPR003106 GO:0006355|GO:0043565
Prci1g3973 280 MobiDBLite consensus disorder prediction 235 254 - -
Prci1g3973 280 Pfam Homeodomain 64 117 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3973 Prci-Chr1 55185288 55188255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3973 1 279 Homeobox Transcription Factor Family AT3G01470 56.207 2.50e-94 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci1g3973 Homeodomain 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3973 K09338 - qsa:O6P43_008987 394.815