Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3960 ATGGACTGCAGAATAGAGCATGCAGAAACCGACAGGAATAAGTGTGCAGCTTGCTTCAGACAGTTCAACAGAATGGATCACCTTGTGGAGCACATGAGGATCTCACATCATTCGGCTCACGAACCCACTTGTGGCATTTGCAGGAAGCACTGCAGGTCCTTTGAGTCTCTGAGGGAACACCTTATGGGTCCATTGCCAAAACAGGAATGCAAAGAAATTTTTGGCAACCGAGGATGCAGATTTTGCTTGAAGGTCCTTGACAGCCCTTATGCTCAAAGGATTCACCAAGAGAGATGTCAGCTTTCTGGAAATGCTGGACTAATTAATCGTTTTTCAAACCTGGGGATCCGTGATAATTTGAGTATTGGAAGAGGGCCACAAGTAGTTGCACTTGCTTGCAAAATGGTCGGAGGTGGCAGTGATGGCTCACTTGATCTCTGTGCAAGAGTCTGCATGATTGATGAACAAGAAAACATCATATTCTATTCCTACGTGAAGCCTTCAATTCCTGTCACAAACTTCAGGTATGAGACAACAGGTATTCGATCAGAATACTTGCGAAATGCAATGGCTGTGAGACAAGTGCAGAGGAAGATCCAAGACTTCCTCTGCAATGGAGAACCCATGTGGAAGATTCGACCTAGGTTTGGTAGAGCCAGGATTCTCGTGGGTCATGGTTTAGATCACGATTTGGAATGTTTGCAGATGGAATATCCAGCAGAAATGACGAGGGACACTGCAAAATACCCTCCATTGATGAAAACGAGCAAGCTCAGCAACTCCCTCAAGTACTTGACACAAGCGTATCTCGGGTATGAAATCCAAACAGGGGTTCAAGATCCATACGAGGATTGCGTGGCAACGATGAGGCTGTACATGAGGATGAGATCTCAAGTACACAAAAAAGAGAAACACGCTTTGGCTTCAGAACCTCAAAATAAGAACAACTTTGCTTCGTGGAGGCGAAAAGAACTAGAGAGAATGAACCCTGAACAAATGCTGGCAATTTCCGAGTCCGACTATTACTGCTGGTGCTTAGATTCCATCTAG 1050 0.4514 MDCRIEHAETDRNKCAACFRQFNRMDHLVEHMRISHHSAHEPTCGICRKHCRSFESLREHLMGPLPKQECKEIFGNRGCRFCLKVLDSPYAQRIHQERCQLSGNAGLINRFSNLGIRDNLSIGRGPQVVALACKMVGGGSDGSLDLCARVCMIDEQENIIFYSYVKPSIPVTNFRYETTGIRSEYLRNAMAVRQVQRKIQDFLCNGEPMWKIRPRFGRARILVGHGLDHDLECLQMEYPAEMTRDTAKYPPLMKTSKLSNSLKYLTQAYLGYEIQTGVQDPYEDCVATMRLYMRMRSQVHKKEKHALASEPQNKNNFASWRRKELERMNPEQMLAISESDYYCWCLDSI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3960 349 SMART exoiiiendus 127 301 IPR013520 -
Prci1g3960 349 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 346 IPR047021 GO:0004527
Prci1g3960 349 CDD REX4_like 129 292 IPR037431 GO:0006364|GO:0008408
Prci1g3960 349 FunFam RNA exonuclease 4 124 311 - -
Prci1g3960 349 SUPERFAMILY beta-beta-alpha zinc fingers 14 61 IPR036236 -
Prci1g3960 349 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Prci1g3960 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Prci1g3960 349 Gene3D - 125 317 IPR036397 GO:0003676
Prci1g3960 349 SUPERFAMILY Ribonuclease H-like 141 299 IPR012337 -
Prci1g3960 349 Pfam Exonuclease 150 292 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3960 Prci-Chr1 55087286 55090373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3960 1 349 C2H2 Transcription Factor Family AT3G27970 71.067 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3960 - - gmx:100813973 609.372