Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3959 ATGGACAGCAGAATCGAGTACGCAGAAACTCAAAGGAACAAGTGTGCAGCATGCTTTAGGCAGTTCAACAAGAAGGAGCATTTAGTGGAGCACATGAGGATCTCATATCATTCGGTTCACGAACCCACTTGTGGCATCTGCGGGAAACACTGCAGATCATTTGAATCTCTAAGGGAACACCTTATAGGCCCATTGCCGAAACAGGAATGCAGAGATATTTTTGCCAACCGGGGATGCAAGTTTTGCTTGAAGGTCCTTGACAGCCCTAACGCTCGAAGGATTCACCAACAAAGATGCCAACTTTCTGCAAATACTGGACTGATTGGACGCTTTTCAAACTTGGGGATTCGTGATAATCTGACTATTGGAACTGGGCCTCGAGTAGTCGCACTTGCTTGCAAAATGGTAGGAGGCGGCAGTGATGGCTCACTTGATCTCTGTGCAAGAGTCTGCATAATTGACGAGCAAGAAAACATCATATTCCATTCTTACGTGAAGCCCCCAATTCCTGTCACAAACTACAGGTATGAGACAACAGGTATTCGACCAGAATACTTGAGGGATGCAATGACGACGAGGCAAGTGCAGAGGAAGGTTCAAGACTTCCTCTGCAATGGAGAACCCATGTGGAAGATTCGACCAAAGTGCGGGAGAGCCAGGGTTCTTGTAGGTCATGGGTTAGATCATGACCTGGAGAGTTTGCAAGTGGAATATCGGGCAGAAATGATCAGGGACACCGCAAAATACCCTCCATTGATGAAGACGAGCAAGCTGAGCAGCTCACTGAAGTATTTGGCACAGACATATCTTGGGTATGACATCCAAAGCGGGATACAGGATCCGTACGAGGATTGCGTGGCAACGATGAGGCTGTACGCGAGGATGAGATCACAAGTACACGAAAAAGAGGAACACGCTTGGGCCTCAGAGCCTCAAAATAAGAATAACTTTGCTTCGTGGAGGACAAAAGAACTGGAGAGAATGACCCCTGAACAAATGCTAGCAATCTCCAGGTCTGACTATCGCTGCTGGTGCCTTGACTCTATATAG 1050 0.4733 MDSRIEYAETQRNKCAACFRQFNKKEHLVEHMRISYHSVHEPTCGICGKHCRSFESLREHLIGPLPKQECRDIFANRGCKFCLKVLDSPNARRIHQQRCQLSANTGLIGRFSNLGIRDNLTIGTGPRVVALACKMVGGGSDGSLDLCARVCIIDEQENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMTTRQVQRKVQDFLCNGEPMWKIRPKCGRARVLVGHGLDHDLESLQVEYRAEMIRDTAKYPPLMKTSKLSSSLKYLAQTYLGYDIQSGIQDPYEDCVATMRLYARMRSQVHEKEEHAWASEPQNKNNFASWRTKELERMTPEQMLAISRSDYRCWCLDSI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3959 349 Pfam Exonuclease 146 290 IPR013520 -
Prci1g3959 349 Gene3D - 125 316 IPR036397 GO:0003676
Prci1g3959 349 SMART exoiiiendus 127 301 IPR013520 -
Prci1g3959 349 FunFam RNA exonuclease 4 124 311 - -
Prci1g3959 349 CDD REX4_like 129 292 IPR037431 GO:0006364|GO:0008408
Prci1g3959 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Prci1g3959 349 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Prci1g3959 349 Gene3D Classic Zinc Finger 3 63 - -
Prci1g3959 349 SUPERFAMILY Ribonuclease H-like 133 296 IPR012337 -
Prci1g3959 349 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 17 328 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3959 Prci-Chr1 55077216 55079289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3959 1 349 C2H2 Transcription Factor Family AT5G40310 73.034 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3959 - - gmx:100813973 598.586