Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3940 ATGGACAAGAAACCGTGCAATTCATCTCAGGACCCAGAAGTGAGAAAAGGGCCTTGGACCATGGAAGAAGACTTGATCTTGATCAACTATATTGCAAATCATGGTGAAGGAGTCTGGAACTCCTTAGCCAAGGCTGCTGGTCTTAAACGTACTGGGAAGAGTTGTCGGCTCCGGTGGCTAAACTATCTTCGTCCTGATGTTAGAAGAGGGAATATTACACCAGAGGAACAGCTTTTGATCATGGAGCTTCATGCAAAGTGGGGAAACAGGTGGTCAAAGATCGCAAAACATCTACCAGGAAGAACTGATAATGAGATCAAGAACTATTGGAGGACTAGGATTCAGAAGCACATTAAGCAGGCAGAGAACTGCTCGCAACAACATTCTCAAGTAAGTTCTGAGACAGCAGATCATCAGCAGGCCAGCAGCAGCCACGTGTCCAACACCATGGCTGATTCTCAGCCAATGGACACGTACTCTCCGTCCTCCTTTAATCAAGTGACTCTCACTGATCAGCCCTTTCCAACGCATCCATTTTCCACCGTACTCGATCAGTCCTCCATTTGCACCAGTCACGAGACTAACTATTGGACAAATCAGATGATGCGAGTTTGA 615 0.465 MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENCSQQHSQVSSETADHQQASSSHVSNTMADSQPMDTYSPSSFNQVTLTDQPFPTHPFSTVLDQSSICTSHETNYWTNQMMRV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3940 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Prci1g3940 204 FunFam Myb-related protein 305 73 146 - -
Prci1g3940 204 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Prci1g3940 204 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 169 IPR044676 GO:0003700|GO:0006355|GO:0043565
Prci1g3940 204 CDD SANT 73 112 IPR001005 -
Prci1g3940 204 SMART sant 68 116 IPR001005 -
Prci1g3940 204 SMART sant 15 65 IPR001005 -
Prci1g3940 204 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Prci1g3940 204 Gene3D - 73 146 - -
Prci1g3940 204 MobiDBLite consensus disorder prediction 120 171 - -
Prci1g3940 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Prci1g3940 204 CDD SANT 18 63 IPR001005 -
Prci1g3940 204 Gene3D - 16 68 - -
Prci1g3940 204 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Prci1g3940 204 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Prci1g3940 204 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Prci1g3940 204 FunFam Myb transcription factor 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3940 Prci-Chr1 54929741 54933418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3940 10 197 MYB Transcription Factor Family AT3G01530 57.979 1.91e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g3940 Myb_DNA-binding 6.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3940 K09422 - gmx:778046 296.975