LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g3935	ATGGCTTCGGCTGTTGGAATGGCTGGTGGTGATTCCATGATTGTTGATAAACTCCCTGAGGAGATCAATGAAATGAAGATCAAGGATGAAAAGGAAATGGAGACAGCAATGGTAGATGGAAATGGAACTGAAACTGGCCACATCATTGTCACTACAATTGGTGGTCGAAATGGTCAACCCAAACAGACCATAAGTTACATGGCTGAGCGTGTTGTTGGACAAGGCTCATTTGGTATTGTGTTTCAGGCCAAGTGTCTTGAAACTGGAGAAACAGTAGCAATCAAGAAGGTCTTGCAGGATAAAAGATACAAAAACCGTGAACTGCAAACAATGCGCCTTCTTGATCATCCCAATGTTGTGTCACTCAAACATTGCTTCTTTTCCACCACAGATAAGGATGAACTTTATCTCAATTTAGTGCTTGAGTATGTCCCTGAGACTGTATATCGTGTGGTGAAGCACTATAGCAAGGCAAATCAGCGGATGCCCTTGATATATGTCAAACTCTACACATATCAGATTTGCAGAGCTTTGGCTTATATTCATGGATGTGTTGGAGTGTGCCACAGGGATATTAAACCTCAGAACCTACTGGTTAATCCTCACACTCATCAGGTCAAGCTTTGTGATTTTGGAAGTGCGAAAGTTCTGGTCAAAGGTGAACCCAACATATCATATATCTGCTCTCGTTACTACCGAGCACCTGAACTTATTTTTGGCGCAACTGAATATACAACTGCGATTGACATGTGGTCTGTGGGTTGTGTCCTGGCTGAGCTGCTCCTAGGACAGCCTCTATTCCCTGGGGAAAGTGGTGTTGATCAGCTTGTTGAGATTATCAAGGTGCTTGGGACGCCAACTCGTGAGGAGATAAAATGCATGAATCCAAACTATACAGAGTTTAAGTTTCCTCAAATCAAGGCTCATCCCTGGCATAAGATATTTCATAAGCGTATGCCCCCAGAAGCAGTAGATCTTGTTTCCAGACTCCTCCAGTACTCACCAAATTTACGATGCACTGCTCTGGAGGCTTGCGTCCACCCATTTTTTGATGAACTTCGTGATCCTACTACTCGTCTCCCTCACGGCCGCCCATTGCCGCCACTCTTCAACTTTAAACCTCATGAGCTAAAAGGAGCAACCTTGGAGCTTATATGCAAACTTGTTCCAGAACATGCTAGGAAGCAGTGTCCTTCGCTTAACTTCTGA	1209	0.4409	MASAVGMAGGDSMIVDKLPEEINEMKIKDEKEMETAMVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVYRVVKHYSKANQRMPLIYVKLYTYQICRALAYIHGCVGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALEACVHPFFDELRDPTTRLPHGRPLPPLFNFKPHELKGATLELICKLVPEHARKQCPSLNF	402

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Prci1g3935	402	ProSiteProfiles	Protein kinase domain profile.	66	350	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Prci1g3935	402	SUPERFAMILY	Protein kinase-like (PK-like)	65	374	IPR011009	-
Prci1g3935	402	CDD	STKc_GSK3	61	353	IPR039192	-
Prci1g3935	402	FunFam	Glycogen synthase kinase-3 beta	50	145	-	-
Prci1g3935	402	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	187	199	IPR008271	GO:0004672\|GO:0006468
Prci1g3935	402	ProSitePatterns	Protein kinases ATP-binding region signature.	72	96	IPR017441	GO:0005524
Prci1g3935	402	FunFam	Shaggy-related protein kinase kappa	146	394	-	-
Prci1g3935	402	SMART	serkin_6	66	350	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Prci1g3935	402	Pfam	Protein kinase domain	66	350	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Prci1g3935	402	Gene3D	Transferase(Phosphotransferase) domain 1	146	394	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g3935	Prci-Chr1	54886448	54892528	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g3935	72	358	Core Cell Cycle Gene Families	AT1G76540	34.576	4.98e-57	187

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Prci1g3935		Pkinase	3.9e-65	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g3935	K27413		-	qsa:O6P43_008947	795.808

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