Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3928 ATGGCTGCTACTGCAACAGCCTCTTCAGTGGGTCCAAGATATGCACCGCATGACCCAACACTTCCTAAACCATGGCGGGGACTTGTTGATGGTAAGACCGGTTATCTGTACTTTTGGAATCCCGAGACTAATGTCACCCAATATGAGAGGCCTACAATCTCAGCTACCTTGCCCAAGTCTTCTTCAGTGCCTAGTTCTTCAGTCCAGGTCCAACAATCATCACAAGGGCGTCGGGACCGCAGTCCTGATTTAGATGATAGGTATGGTAGAAGCAACGTTGGTGGATCAAATTCTGAAGCTGGATCTCGGAATCATCAGAATCCAAAAGGTGGGAGTTTCAGTTCTCATAATGTTCCAAATGGAATGCACATGACTGGAAATGTCATCTCTTCTATCAAAAGTGGATTATCAGATGCAGGAGTTGGATTAACTCCAGAGTCTTATCGACGTCGCCATGAAATAACTGTTTCTGGAGATAATGTTCCTCCACCTTTCATGTCCTTTGGCTCTACTGGCTTTCCGTCAGAGATTCTTAGAGAGGTACACAATGCTGGGTTCTCTGCCCCAACACCCATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCCAAAACAGGTTCAGGGAAAACCCTGGGATATTTAATTCCAGGTTTCATCCATCTCAAACGTGTTGGCAGTGACTCCAAATTGGGCCCCACTGTATTGGTACTGTCACCGACTAGGGAGCTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGCAAAATCATCTAGAATTTCTTGTGCATGTTTGTATGGGGGAGCACCAAAGGGTCCTCAATTGAGAGACATTGACCGAGGAGCAGATATTGTGGTTGCCACTCCTGGCCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCATCAGGTGTCTTACCTTGTACTAGATGAAGCTGACCGTATGCTGGATATGGGTTTTGAACCTCAAATCAGGAAGGTTGTGAAGGAAGTGCCTGCACGGCGGCAAACCCTCATGTTTACTGCAACCTGGCCTAAGGAGGTCAGGAAAATTGCAGCTGATTTGCTGGTCAATCCTGTTCAGGTTAACATTGGCAATGTTGATGAGCTTGTTGCTAATAAGTCCATTACACAGCATATAGAAGTATTGGCACCAATGGAGAAACACAGACGATTGGAGCAAATATTGCGGTCGCAGGATCCAGGATCAAAAATAATTATTTTTTGCTCTACCAAGAAGATGTGTGATCAACTTGCTCGTAATCTTACACGCCAATTCGGTGCTGCTGCCATTCATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAACCAATTTCGAACTGGGAGATCTCCTGTGCTTGTAGCAACAGATGTTGCAGCTCGAGGATTGGACATCAAAGATATTAGGGTTGTTGTCAACTATGACTTCCCAACTGGTGTGGAGGACTATGTTCATAGGATTGGAAGGACAGGGAGGGCAGGAGCCACTGGCTTGGCATACACGTTTTTTGGAGATCAGGATGCTAAACATGCTTCAGATCTTGTCAAAATCTTGGAAGGTGCAAATCAGCAAGTACCACCAGCACTCCATGATTTGGCATCACGTGGTGGTGGGATGAACAGATCCAGGCGATGGGGTTCTGGTGTTCGTGGTGGACGCAGCGATTCTGGATATGGAGGAAGGGGTAATGACTCTGGATACGGTGGAAGGGGTAATGATTCTGGATATGGTGGAAGGGGTAGTGATTCTGGATATGGTGGAAGGGGTGGGTTGGGAGCCACTCCTGGTGGCCGAGGTGGAGGCCGTGGATTTGACTATGATCTTCAGAGGAATGATCGAAGTCACTACGGACAAGATGCAGATACCCATGAGAAGTATGATAAAGGACAGAGTCGTAGCAGGAGCCCTGATAGGAGCAGAAGCTTCTACCGTGAACGCGGCCGGAGTCGAAGTCCCAACAGGCATGAAAGGGCTGCACCACCTTCGCAAGGCTTTAGTTTTCATCATGCAATCATGGAGCATAAAGGGGGCAGTGATCATGACAAGAGCTTTGATCAAGATAGAAACAGGAGTCGCAGCCCTGTTAAGCATGACAGGGCTCCATCTGGCCAAGAACGTTCCCCAGTTTATAGTTTTCATCAAATGATGATGGAACGTGGCCAGCCATCTGGCTCATCTAGGCAGCAGCGTGTCAGTGATGGCAGTAAAGATGACAGAAGTTCAAGATACACTTATAGTACTTACCGGACTAGCTCACCATCCTCCCCAGGTGGTGGCATGTCCGAGAAAGGTACTCGTAAAGAGTGGGGAAGATCTCCCAGAGGTAAGTTGGATGATGGGAGATATGGTGGGGAAGAGGAGGAGGGGATGATTCCTGATGAAGGCGAGGGTACTTGTTAA 2433 0.4739 MAATATASSVGPRYAPHDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTISATLPKSSSVPSSSVQVQQSSQGRRDRSPDLDDRYGRSNVGGSNSEAGSRNHQNPKGGSFSSHNVPNGMHMTGNVISSIKSGLSDAGVGLTPESYRRRHEITVSGDNVPPPFMSFGSTGFPSEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVGSDSKLGPTVLVLSPTRELATQIQDEAVKFAKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKVVKEVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAPMEKHRRLEQILRSQDPGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLVKILEGANQQVPPALHDLASRGGGMNRSRRWGSGVRGGRSDSGYGGRGNDSGYGGRGNDSGYGGRGSDSGYGGRGGLGATPGGRGGGRGFDYDLQRNDRSHYGQDADTHEKYDKGQSRSRSPDRSRSFYRERGRSRSPNRHERAAPPSQGFSFHHAIMEHKGGSDHDKSFDQDRNRSRSPVKHDRAPSGQERSPVYSFHQMMMERGQPSGSSRQQRVSDGSKDDRSSRYTYSTYRTSSPSSPGGGMSEKGTRKEWGRSPRGKLDDGRYGGEEEEGMIPDEGEGTC 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3928 810 MobiDBLite consensus disorder prediction 537 810 - -
Prci1g3928 810 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 166 194 IPR014014 GO:0003724
Prci1g3928 810 Pfam Helicase conserved C-terminal domain 397 505 IPR001650 -
Prci1g3928 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 520 IPR027417 -
Prci1g3928 810 MobiDBLite consensus disorder prediction 775 799 - -
Prci1g3928 810 CDD WW 22 53 IPR001202 GO:0005515
Prci1g3928 810 SMART ww_5 20 53 IPR001202 GO:0005515
Prci1g3928 810 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 544 IPR001650 -
Prci1g3928 810 Gene3D - 12 58 - -
Prci1g3928 810 MobiDBLite consensus disorder prediction 683 714 - -
Prci1g3928 810 SUPERFAMILY WW domain 13 54 IPR036020 GO:0005515
Prci1g3928 810 SMART ultradead3 185 388 IPR014001 -
Prci1g3928 810 Gene3D - 376 546 IPR027417 -
Prci1g3928 810 MobiDBLite consensus disorder prediction 616 666 - -
Prci1g3928 810 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 371 IPR014001 -
Prci1g3928 810 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 116 544 - -
Prci1g3928 810 MobiDBLite consensus disorder prediction 91 128 - -
Prci1g3928 810 MobiDBLite consensus disorder prediction 56 128 - -
Prci1g3928 810 Gene3D - 144 375 IPR027417 -
Prci1g3928 810 MobiDBLite consensus disorder prediction 755 770 - -
Prci1g3928 810 Pfam DEAD/DEAH box helicase 190 360 IPR011545 GO:0003676|GO:0005524
Prci1g3928 810 MobiDBLite consensus disorder prediction 1 26 - -
Prci1g3928 810 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 317 325 IPR000629 -
Prci1g3928 810 SMART helicmild6 425 505 IPR001650 -
Prci1g3928 810 CDD SF2_C_DEAD 385 514 - -
Prci1g3928 810 FunFam ATP-dependent RNA helicase RhlB 375 547 - -
Prci1g3928 810 MobiDBLite consensus disorder prediction 56 77 - -
Prci1g3928 810 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Prci1g3928 810 FunFam probable ATP-dependent RNA helicase DDX17 143 374 - -
Prci1g3928 810 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3928 Prci-Chr1 54867924 54873144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3928 164 543 Eukaryotic Initiation Factors Gene Family AT3G19760 33.681 1.15e-64 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3928 K12823 - gmx:100786511 998.423