LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g3920	ATGGAACATTCCTCCCTCCCATCTACATGCCTTCTCATTCCCATCCTCTTCATCTTTTTCTGTTTCCCTCCCTCCCTTCTCTCCGATCCTCGAATCTCCCTCGCCGGCCTCTTCTGCGGCAACTCCAAAGCTCCTCTCTCTTCCCATTACATCCCCATCTTCGTCCAGGAAATGCACTCTCTCTCCCAGACCATCACCACTCAGAACTGGGCTTCTCACTCCCTCAATCTCTCTTCCCTCCCCATCTTCGGTTTCGCTCAGTGCTTCCACGACCTTTCCCACACCGATTGCCTCCTCTGCTACGCCGCCAGTCGCACCAAGCTCCCTCGCTGCCTCCCGTCACTCTCCGCGCGCATCTACCTCGACGGCTGCTTCCTTCGCTACGATAACTACAGTTTCTACTCGGAAGCCATTGATCCTGTCAGGGACACCGTGAACTGTAGCGCCGAGTATGGTGTGGTGGAGGATGAAGGCGATGAGAGGTGGAAATTCGACAAGAGTCTCGGCGAGGTGTTTGATAATGTGGTGAGGGTTGCTGTAGGAGAGGGATTCGGCTTCGGTGTGGGAGAGGTTGGGGGAGTTTATGCTCTGGCTCAGTGTTGGAAGACGTTGGAGAGTGATGCGTGTGAGAATTGCTTGAGGAAAGCGGTGAGAGAGGTGAGAGGTTGCTTGCCTAAGAGGGAAGGAAGGGCTTTGAATGCTGGATGCTATTTGAGATACTCATCTTTCAAGTTCTACAACGAAGGAGGTGAAGAACAGGGTCAAAAGGGGTCATTCAGGAGGGGAGCCGTTATAGCAATTGTGTTATCTGTGGCTGCGGTTGTGTTGCTGTTTCTCTCTGCCTTTTATGTAATCTTCTCAAGAATATCAAAGATGAATAAAGAAAACAGTCGGCTTGGCCAGATTTCGATTTCCATAAACAAGTCACGTTTGAACTTCAAATACGAGACTCTGGAGAAGGCCACCGATTATTTCAACTCTTCAAGAAAAATTGGCCAGGGAGGGGCTGGTTCTGTGTTCAAAGGGACTCTGTCAAATGGGAAAGTCGTGGCTGTCAAGAGATTAGTGTTCAATAACAGGCAATGGGTTGACGAGTTCTTTAACGAAGTGAATTTGATCAGCGGAATTGAGCACAAGAACCTTGTCAAACTCTTGGGTTGTAGCATTGAAGGCCCCGAGAGCCTCCTTGTGTACGAGTACCTACCCAACAAGAGCTTGGATCAATTCATTTTTGAAAAGAACAAAAGTCAGGTTCTGAATTGGAGGCAGCGTTTTGGTATAATAATTGGAATAGCAGAGGGGCTTGCATATCTTCACGCAGGATCTAAAATAAGAATAATCCATAGAGACATCAAAAGTAGCAACATTCTTCTGGACGAGAATCTCACTCCTAAAATTGCCGACTTTGGCCTCGCCCGCTGTTTTGCTGCCGACAAGACGCATCTTAGCACTGGAATTGCCGGAACACTAGGATACATGGCACCTGAATATCTTACTCGAGGCCAACTAACAGATAAAGCTGATGTCTATAGCTTTGGAGTGCTTGTTCTGGAAATTTTATGTGGCAGAAGGAACAATGTCTTCAGAGAAGACTCTGGCTCCCTTCTACAAACAATCTGGAAACTGTATCGATCAAACCGATTACATGAAGCTGTGGATCCATGCTTAGGGGATGATTCTGCAGGAGCAGAATTATCAAGGGTGCTTCAAATAGGGCTGCTATGCACGCAAGCTTCTGCTTCCCTGAGGCCATCCATGGAAGAAGTTGTAGAGCTGCTAAGCAATTCAAACGTGGATGTTTCTGTACCGAGTCAACCCCCATTTTTGAGCGCTGGGACTGGTTTGCTAAACTCGGAGAGCTCTATTAGGTCTTACAGCACAAACAGTTTTGTTTCCAATGCATTGAAGAAGATTGTAACGTCCGAAGTATCATCCTCGGAGACCTTCAGCACTCGCAGTTCAGAACAGGTGAACCAAGCTTGA	1983	0.4786	MEHSSLPSTCLLIPILFIFFCFPPSLLSDPRISLAGLFCGNSKAPLSSHYIPIFVQEMHSLSQTITTQNWASHSLNLSSLPIFGFAQCFHDLSHTDCLLCYAASRTKLPRCLPSLSARIYLDGCFLRYDNYSFYSEAIDPVRDTVNCSAEYGVVEDEGDERWKFDKSLGEVFDNVVRVAVGEGFGFGVGEVGGVYALAQCWKTLESDACENCLRKAVREVRGCLPKREGRALNAGCYLRYSSFKFYNEGGEEQGQKGSFRRGAVIAIVLSVAAVVLLFLSAFYVIFSRISKMNKENSRLGQISISINKSRLNFKYETLEKATDYFNSSRKIGQGGAGSVFKGTLSNGKVVAVKRLVFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPNKSLDQFIFEKNKSQVLNWRQRFGIIIGIAEGLAYLHAGSKIRIIHRDIKSSNILLDENLTPKIADFGLARCFAADKTHLSTGIAGTLGYMAPEYLTRGQLTDKADVYSFGVLVLEILCGRRNNVFREDSGSLLQTIWKLYRSNRLHEAVDPCLGDDSAGAELSRVLQIGLLCTQASASLRPSMEEVVELLSNSNVDVSVPSQPPFLSAGTGLLNSESSIRSYSTNSFVSNALKKIVTSEVSSSETFSTRSSEQVNQA	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g3920	660	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	85	621	-	-
	Prci1g3920	660	Pfam	Protein tyrosine and serine/threonine kinase	328	593	IPR001245	GO:0004672\|GO:0006468
	Prci1g3920	660	ProSiteProfiles	Gnk2-homologous domain profile.	146	245	IPR002902	-
	Prci1g3920	660	SMART	serkin_6	325	649	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g3920	660	FunFam	Cysteine-rich receptor-like protein kinase 2	290	400	-	-
	Prci1g3920	660	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	446	458	IPR008271	GO:0004672\|GO:0006468
	Prci1g3920	660	ProSiteProfiles	Gnk2-homologous domain profile.	32	133	IPR002902	-
	Prci1g3920	660	FunFam	Cysteine-rich receptor-like protein kinase 2	401	601	-	-
	Prci1g3920	660	FunFam	Cysteine-rich receptor-like protein kinase 3	148	245	-	-
	Prci1g3920	660	FunFam	Cysteine-rich receptor-like protein kinase 2	32	133	-	-
	Prci1g3920	660	SUPERFAMILY	Protein kinase-like (PK-like)	306	593	IPR011009	-
	Prci1g3920	660	Pfam	Salt stress response/antifungal	54	131	IPR002902	-
	Prci1g3920	660	Pfam	Salt stress response/antifungal	162	241	IPR002902	-
	Prci1g3920	660	Gene3D	Transferase(Phosphotransferase) domain 1	401	603	-	-
	Prci1g3920	660	Gene3D	Phosphorylase Kinase; domain 1	285	400	-	-
	Prci1g3920	660	ProSiteProfiles	Protein kinase domain profile.	325	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1g3920	660	Gene3D	-	33	133	IPR038408	-
	Prci1g3920	660	Gene3D	-	154	245	IPR038408	-
	Prci1g3920	660	CDD	STKc_IRAK	331	593	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g3920	Prci-Chr1	54780157	54783222	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g3920	15	490	Receptor kinase-like Gene Family	AT5G40380	58.958	0.0	566

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Prci1g3920		PK_Tyr_Ser-Thr	4.1e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g3920	-		-	gmx:100790404	910.983