Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3896 ATGGCCTCTTCTTCAAGCTACTCAAATTCTCCATGTGCCGCGTGCAAGTTTCTGAGAAGGAAATGCATGCCAGACTGCATATTCGCGCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCAAATGTTCACAAAATATTTGGAGCCAGCAACGTGAGCAAGCTGCTGAACGAAGTGCAGCCACATCAGAGAGAGGATGCTGTGAACTCTCTAGCTTATGAAGCCGAAGCAAGGATTAAAGATCCTGTGTATGGCTGTGTAGGAGCCATTTCTGTGCTCCAGAGGCAAGTCATTAGGCTTCAGAAGGAACTTGATGCCACTAATGCTGATTTGATTCGCTATACCTGCAATAATAATGAAATGCCTTCTGGTCAAGCTTCTGCAAGAAGGATGGGTGATGATCAAGGAGGAGCTGGTTCTACGTCTCTTGGTCAATCTCCTTCTGACTTTTATTATCCTTCTCCTTGGAATCATTACTAG 480 0.45 MASSSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNNNEMPSGQASARRMGDDQGGAGSTSLGQSPSDFYYPSPWNHY 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3896 159 MobiDBLite consensus disorder prediction 138 152 - -
Prci1g3896 159 Coils Coil 90 110 - -
Prci1g3896 159 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Prci1g3896 159 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Prci1g3896 159 MobiDBLite consensus disorder prediction 122 159 - -
Prci1g3896 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3896 Prci-Chr1 54591331 54593789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3896 5 129 AS2 family AT3G27650 77.778 1.28e-70 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Prci1g3896 LOB 8.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3896 - - gmx:100306630 270.396