Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3884 ATGTGGGTTTTAATTTCCGGCGAGAGATGGATTTTATTTGTGGCTTTTGGTTCACTTGTTATTGCTGCCGTTTCAGAGATCTCCATGCCAAGTATACTGGCTGCGTCAATATTTTCAGCACAGAGCGGTGAGACCGTGGGTTTCTACCGGAAGGCACAGTCTTTACTTGTTCTGTGTTTCGCTTCAGGCATATGCAGTGGTCTGCGAAGTGGCTGCTTTGGAATTTTGAATGTAATCCTGGTAAAGCGTCTGCGAGAAAATCTGTATGCAGCTCTTCTTTTTCAGGACATATCCTATTTTGATAGAGAGCAGGTTGGTGACTTAACAAGTAGGCTTTCAACAGATTGTCAACGACTATCTTATGTCATAGGAAATGATCTTCATTTGATTTTTCGCAACACTTTACAGGGAACAGGAGCAGTAATTAATTTGCTGACTTTATCATGGCCTTTGGCATTGTCCGCCCTGGTGATTTGCTCTGTTTTATCTGCAATTTTCCTCGTTTATGGCCGGTATCAAAGAAAAGCAGCAAAGTTGACCCAAGATTTCACAGCTAGTGCCAATGAAGTAGCCCAGGAAACCCTTTCACTGGTTAGAACGGTCCGAACCTATGGTGCTGAAGTAGAAGAAGTTGGAAGGTACAAGCAATGGCTTCGGAGATTAGCATTTGTAAACACTAGAGAGAGTTTGGCTTATGGTTTTTGGAATCTGAGTTTTAACACCCTCTACCGTTCAAGTCAGACTAGAAGTGATGTGAAACGCAACATGCAGATATTTGCTGTGCTGTTAGGAGGGATGTCTGTTCTCTGTTGTTGTGTGACTGTGGAACAGCTTACTAAGTATGTGTTATACTGTGAGTGGCTGATATTTGCCACTTGGAGGGTGACAAATAGCTTGTCATCATTCCTGCAGTCCATTGGAGCATGTGAAAAAGTTTTTAAAATGATGGATCTTTTGCCCAGTGACCAATTTCTATCTAAAGGAGTGAAGTTGCAGAGGTTAAGGGGACGTTTTGAGTTTGTAAATGTATCATTTTGCTATCCTACGAGGATCATGGTTCCTGTTCTAGAACGCTTAAACTTTTCTGTAGAAGCAAATGAAGTGATTGCTATAGTTGGTGTTAGTGGCAGCGGAAAGAGCACATTACTCAACCTCTTACTTCGTTTATATGAGCCAAGTAATGGTCAGATTTACATTGATGGGTTTCCTCTCGGAGAATTGGATATCAGATGGCTGAGACAAAACATTGGATATATAGCACAGGAACCACATCTCTTTCACATGGACATTAAGTCAAACATAAAATATGGTTGCCCCAGAGACATTAAACAGGAAGATGTTGAACGAGCAGCAAAGCAGGCCTATGCTCATGACTTTATTTCATCATTTCCCAACGGCTACGAAACCATTGTTGATGATGACTCACTCAGTGGGGGGCAAAAGCAACGAATTGCCATTGCTAGGGCCATTCTTCGGGACCCAATTATTATGATACTTGATGAAGCAACCAGTGCTCTAGATCCTGAGAGTGAGCATTACATCAAGGAGGTTGTATATTCATTAAGAAGTGGATCTAAAGCAAGAACCATCATTATCATAGCACATAGGCTTTCTACCATAAAAGCTGCTGACAGGATCTTCGTAATGGATGGTGGTCGCATCATTGAGTGCTCGCAGATGGGTAACCACGAAGAACTTCTGCTTGAAGATGGGTTCTATGCAAAACTGTATAAGGGTCAAACAGATGCTTTGACTTGA 1758 0.4192 MWVLISGERWILFVAFGSLVIAAVSEISMPSILAASIFSAQSGETVGFYRKAQSLLVLCFASGICSGLRSGCFGILNVILVKRLRENLYAALLFQDISYFDREQVGDLTSRLSTDCQRLSYVIGNDLHLIFRNTLQGTGAVINLLTLSWPLALSALVICSVLSAIFLVYGRYQRKAAKLTQDFTASANEVAQETLSLVRTVRTYGAEVEEVGRYKQWLRRLAFVNTRESLAYGFWNLSFNTLYRSSQTRSDVKRNMQIFAVLLGGMSVLCCCVTVEQLTKYVLYCEWLIFATWRVTNSLSSFLQSIGACEKVFKMMDLLPSDQFLSKGVKLQRLRGRFEFVNVSFCYPTRIMVPVLERLNFSVEANEVIAIVGVSGSGKSTLLNLLLRLYEPSNGQIYIDGFPLGELDIRWLRQNIGYIAQEPHLFHMDIKSNIKYGCPRDIKQEDVERAAKQAYAHDFISSFPNGYETIVDDDSLSGGQKQRIAIARAILRDPIIMILDEATSALDPESEHYIKEVVYSLRSGSKARTIIIIAHRLSTIKAADRIFVMDGGRIIECSQMGNHEELLLEDGFYAKLYKGQTDALT 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3884 585 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 13 242 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci1g3884 585 CDD ABC_6TM_TAP 15 312 - -
Prci1g3884 585 SUPERFAMILY ABC transporter transmembrane region 2 322 IPR036640 GO:0005524|GO:0016020
Prci1g3884 585 SMART AAA_5 365 553 IPR003593 GO:0016887
Prci1g3884 585 PANTHER ABC TRANSPORTER B FAMILY 9 577 IPR039421 -
Prci1g3884 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 580 IPR027417 -
Prci1g3884 585 Gene3D - 328 584 IPR027417 -
Prci1g3884 585 ProSitePatterns ABC transporters family signature. 476 490 IPR017871 GO:0005524|GO:0016887
Prci1g3884 585 FunFam Multidrug ABC transporter ATP-binding protein 330 584 - -
Prci1g3884 585 Pfam ABC transporter 356 504 IPR003439 GO:0005524
Prci1g3884 585 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 338 576 IPR003439 GO:0005524
Prci1g3884 585 Gene3D ABC transporter type 1, transmembrane domain 1 322 IPR036640 GO:0005524|GO:0016020
Prci1g3884 585 Pfam ABC transporter transmembrane region 13 234 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3884 Prci-Chr1 54507494 54516495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3884 83 583 Calmodulin-binding Proteins AT2G36910 34.667 4.12e-73 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3884 - - pcin:129294067 1149.81