Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3882 ATGCTGAACGGCGAAAGGTGGCTTCCGAACCCACACCGGAAAATGTCCGTGAAGCCTTGCTCCCATTTCCCGCGAAGCAAAAGCTTTTCTTTCATTTACGGATCGAATAGTGTCACTTGCAAAACCAAAACCCCATTTTTATTTTCCTTTAAAAGCTTGCAAAGTGCTAATTCGAAGTGCTATAAGAGGTTTGAATGCAGGAATTTGAAAACTTCTTGCCAATTCTTTGTTTCAGAGAATGATAAGTACGACTATGTTGATTCTGGGTTACGGAAGGCGTTTTCCTTTGCCCGGTCGATTTCACCTGGTGGTAGCTGGTGGAACTTATCTGAACATAAGCAAGACAATGTTGAAGCGGCAAAGCCATTAACGGCGCTGCTTGCTCTTCGCCGGATGTGGGTTTTAATTTCCGGCGAGAGATGGATTTTATTTGTGGCTTTTGGTTCACTTGTTATTGCTGCCGTTTCAGAGATCTCCATGCCAAGTATACTGGCTGCGTCAATATTTTCAGCACAGAGCGGTGAGACCGTGGGTTTCTACCGGAAGGCACAGTCTTTACTTGTTCTGTGTTTCGCTTCAGGCATATGCAGTGGTCTGCGAAGTGGCTGCTTTGGAATTTTGAATGTAATCCTGGTAAAGCGTCTGCGAGAAAATCTGTATGCAGCTCTTCTTTTTCAGGACATATCCTATTTTGATAGAGAGCAGGTTGGTGACTTAACAAGTAGGCTTTCAACAGATTGTCAACGACTATCTTATGTCATAGGAAATGATCTTCATTTGATTTTTCGCAACACTTTACAGGGAACAGGAGCAGTAATTAATTTGCTGACTTTATCATGGCCTTTGGCATTGTCCGCCCTGGTGATTTGCTCTGTTTTATCTGCAATTTTCCTCGTTTATGGCCGGTATCAAAGAAAAGCAGCAAAGTTGACCCAAGATTTCACAGCTAGTGCCAATGAAGTAGCCCAGGAAACCCTTTCACTGGTTAGAACGGTCCGAACCTATGGTGCTGAAGTAGAAGAAGTTGGAAGGTACAAGCAATGGCTTCGGAGATTAGCATTTGTAAACACTAGAGAGAGTTTGGCTTATGGTTTTTGGAATCTGAGTTTTAACACCCTCTACCGTTCAAGTCAGACTAGAAGTGATGTGAAACGCAACATGCAGATATTTGCTGTGCTGTTAGGAGGGATGTCTGTTCTCTGTTGTTGTGTGACTGTGGAACAGCTTACTAAGTATGTGTTATACTGTGAGTGGCTGATATTTGCCACTTGGAGGGTGACAAATAGCTTGTCATCATTCCTGCAGTCCATTGGAGCATGTGAAAAAGTTTTTAAAATGATGGATCTTTTGCCCAGTGACCAATTTCTATCTAAAGGAGTGAAGTTGCAGAGGTTAAGGGGACGTTTTGAGTTTGTAAATGTATCATTTTGCTATCCTACGAGGATCATGGTTCCTGTTCTAGAACGCTTAAACTTTTCTGTAGAAGCAAATGAAGTGATTGCTATAGTTGGTGTTAGTGGCAGCGGAAAGAGCACATTACTCAACCTCTTACTTCGTTTATATGAGCCAAGTAATGGTCAGATTTACATTGATGGGTTTCCTCTCGGAGAATTGGATATCAGATGGCTGAGACAAAACATTGGATATATAGCACAGGAACCACATCTCTTTCACATGGACATTAAGTCAAACATAAAATATGGTTGCCCCAGAGACATTAAACAGGAAGATGTTGAACGAGCAGCAAAGCAGGCCTATGCTCATGACTTTATTTCATCATTTCCCAACGGCTACGAAACCATTGTTGATGATGACTCACTCAGTGGGGGGCAAAAGCAACGAATTGCCATTGCTAGGGCCATTCTTCGGGACCCAATTATTATGATACTTGATGAAGCAACCAGTGCTCTAGATCCTGAGAGTGAGCATTACATCAAGGAGGTTGTATATTCATTAAGAAGTGGATCTAAAGCAAGAACCATCATTATCATAGCACATAGGCTTTCTACCATAAAAGCTGCTGACAGGATCTTCGTAATGGATGGTGGTCGCATCATTGAGATGGGTAACCACGAAGAACTTCTGCTTGAAGATGGGTTCTATGCAAAACTGTATAAGGGTCAAACAGATGCTTTGACTTGA 2142 0.423 MLNGERWLPNPHRKMSVKPCSHFPRSKSFSFIYGSNSVTCKTKTPFLFSFKSLQSANSKCYKRFECRNLKTSCQFFVSENDKYDYVDSGLRKAFSFARSISPGGSWWNLSEHKQDNVEAAKPLTALLALRRMWVLISGERWILFVAFGSLVIAAVSEISMPSILAASIFSAQSGETVGFYRKAQSLLVLCFASGICSGLRSGCFGILNVILVKRLRENLYAALLFQDISYFDREQVGDLTSRLSTDCQRLSYVIGNDLHLIFRNTLQGTGAVINLLTLSWPLALSALVICSVLSAIFLVYGRYQRKAAKLTQDFTASANEVAQETLSLVRTVRTYGAEVEEVGRYKQWLRRLAFVNTRESLAYGFWNLSFNTLYRSSQTRSDVKRNMQIFAVLLGGMSVLCCCVTVEQLTKYVLYCEWLIFATWRVTNSLSSFLQSIGACEKVFKMMDLLPSDQFLSKGVKLQRLRGRFEFVNVSFCYPTRIMVPVLERLNFSVEANEVIAIVGVSGSGKSTLLNLLLRLYEPSNGQIYIDGFPLGELDIRWLRQNIGYIAQEPHLFHMDIKSNIKYGCPRDIKQEDVERAAKQAYAHDFISSFPNGYETIVDDDSLSGGQKQRIAIARAILRDPIIMILDEATSALDPESEHYIKEVVYSLRSGSKARTIIIIAHRLSTIKAADRIFVMDGGRIIEMGNHEELLLEDGFYAKLYKGQTDALT 713
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3882 713 SMART AAA_5 496 684 IPR003593 GO:0016887
Prci1g3882 713 Gene3D - 459 712 IPR027417 -
Prci1g3882 713 Pfam ABC transporter transmembrane region 144 365 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci1g3882 713 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 144 373 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci1g3882 713 FunFam Multidrug ABC transporter ATP-binding protein 461 712 - -
Prci1g3882 713 Gene3D ABC transporter type 1, transmembrane domain 124 453 IPR036640 GO:0005524|GO:0016020
Prci1g3882 713 PANTHER ABC TRANSPORTER B FAMILY 114 705 IPR039421 -
Prci1g3882 713 ProSitePatterns ABC transporters family signature. 607 621 IPR017871 GO:0005524|GO:0016887
Prci1g3882 713 Pfam ABC transporter 487 635 IPR003439 GO:0005524
Prci1g3882 713 CDD ABC_6TM_TAP 146 443 - -
Prci1g3882 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 469 707 IPR003439 GO:0005524
Prci1g3882 713 SUPERFAMILY ABC transporter transmembrane region 130 453 IPR036640 GO:0005524|GO:0016020
Prci1g3882 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 708 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Prci1g3882 Prci-Chr1 54507494 54516562 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3882 214 711 Calmodulin-binding Proteins AT2G36910 34.866 7.39e-74 258
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3882 - - pcin:129294067 1410.2