Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci1g3880 | ATGCTGAACGGCGAAAGGTGGCTTCCGAACCCACACCGGAAAATGTCCGTGAAGCCTTGCTCCCATTTCCCGCGAAGCAAAAGCTTTTCTTTCATTTACGGATCGAATAGTGTCACTTGCAAAACCAAAACCCCATTTTTATTTTCCTTTAAAAGCTTGCAAAGTGCTAATTCGAAGTGCTATAAGAGGTTTGAATGCAGGAATTTGAAAACTTCTTGCCAATTCTTTGTTTCAGAGAATGATAAGTACGACTATGTTGATTCTGGGTTACGGAAGGCGTTTTCCTTTGCCCGGTCGATTTCACCTGGTGGTAGCTGGTGGAACTTATCTGAACATAAGCAAGACAATGTTGAAGCGGCAAAGCCATTAACGGCGCTGCTTGCTCTTCGCCGGATGTGGGTTTTAATTTCCGGCGAGAGATGGATTTTATTTGTGGCTTTTGGTTCACTTGTTATTGCTGCCGTTTCAGAGATCTCCATGCCAAGTATACTGGCTGCGTCAATATTTTCAGCACAGAGCGGTGAGACCGTGGGTTTCTACCGGAAGGCACAGTCTTTACTTGTTCTGTGTTTCGCTTCAGGCATATGCAGTGGTCTGCGAAGTGGCTGCTTTGGAATTTTGAATGTAATCCTGGTAAAGCGTCTGCGAGAAAATCTGTATGCAGCTCTTCTTTTTCAGGACATATCCTATTTTGATAGAGAGCAGGTTGGTGACTTAACAAGTAGGCTTTCAACAGATTGTCAACGACTATCTTATGTCATAGGAAATGATCTTCATTTGATTTTTCGCAACACTTTACAGGGAACAGGAGCAGTAATTAATTTGCTGACTTTATCATGGCCTTTGGCATTGTCCGCCCTGGTGATTTGCTCTGTTTTATCTGCAATTTTCCTCGTTTATGGCCGGTATCAAAGAAAAGCAGCAAAGTTGACCCAAGATTTCACAGCTAGTGCCAATGAAGTAGCCCAGGAAACCCTTTCACTGGTTAGAACGGTCCGAACCTATGGTGCTGAAGTAGAAGAAGTTGGAAGGTACAAGCAATGGCTTCGGAGATTAGCATTTGTAAACACTAGAGAGAGTTTGGCTTATGGTTTTTGGAATCTGAGTTTTAACACCCTCTACCGTTCAAGTCAGACTAGAAGTGATGTGAAACGCAACATGCAGATATTTGCTGTGCTGTTAGGAGGGATGTCTGTTCTCTGTTGTTGTGTGACTGTGGAACAGCTTACTAAGTATGTGTTATACTGTGAGTGGCTGATATTTGCCACTTGGAGGGTGACAAATAGCTTGTCATCATTCCTGCAGTCCATTGGAGCATGTGAAAAAGTTTTTAAAATGATGGATCTTTTGCCCAGTGACCAATTTCTATCTAAAGGAGTGAAGTTGCAGAGGTTAAGGGGACGTTTTGAGTTTGTAAATGTATCATTTTGCTATCCTACGAGGATCATGGTTCCTGTTCTAGAACGCTTAAACTTTTCTGTAGAAGCAAATGAAGTGATTGCTATAGTTGGTGTTAGTGGCAGCGGAAAGAGCACATTACTCAACCTCTTACTTCGTTTATATGAGCCAAGTAATGGTCAGATTTACATTGATGGGTTTCCTCTCGGAGAATTGGATATCAGATGGCTGAGACAAAACATTGGATATATAGCACAGGAACCACATCTCTTTCACATGGACATTAAGTCAAACATAAAATATGGTTGCCCCAGAGACATTAAACAGGAAGATGTTGAACGAGCAGCAAAGCAGGCCTATGCTCATGACTTTATTTCATCATTTCCCAACGGCTACGAAACCATTGTTGATGATGACTCACTCAGTGGGGGGCAAAAGCAACGAATTGCCATTGCTAGGGCCATTCTTCGGGACCCAATTATTATGATACTTGATGAAGCAACCAGTGCTCTAGATCCTGAGAGTGAGCATTACATCAAGATGGGTAACCACGAAGAACTTCTGCTTGAAGATGGGTTCTATGCAAAACTGTATAAGGGTCAAACAGATGCTTTGACTTGA | 2019 | 0.4245 | MLNGERWLPNPHRKMSVKPCSHFPRSKSFSFIYGSNSVTCKTKTPFLFSFKSLQSANSKCYKRFECRNLKTSCQFFVSENDKYDYVDSGLRKAFSFARSISPGGSWWNLSEHKQDNVEAAKPLTALLALRRMWVLISGERWILFVAFGSLVIAAVSEISMPSILAASIFSAQSGETVGFYRKAQSLLVLCFASGICSGLRSGCFGILNVILVKRLRENLYAALLFQDISYFDREQVGDLTSRLSTDCQRLSYVIGNDLHLIFRNTLQGTGAVINLLTLSWPLALSALVICSVLSAIFLVYGRYQRKAAKLTQDFTASANEVAQETLSLVRTVRTYGAEVEEVGRYKQWLRRLAFVNTRESLAYGFWNLSFNTLYRSSQTRSDVKRNMQIFAVLLGGMSVLCCCVTVEQLTKYVLYCEWLIFATWRVTNSLSSFLQSIGACEKVFKMMDLLPSDQFLSKGVKLQRLRGRFEFVNVSFCYPTRIMVPVLERLNFSVEANEVIAIVGVSGSGKSTLLNLLLRLYEPSNGQIYIDGFPLGELDIRWLRQNIGYIAQEPHLFHMDIKSNIKYGCPRDIKQEDVERAAKQAYAHDFISSFPNGYETIVDDDSLSGGQKQRIAIARAILRDPIIMILDEATSALDPESEHYIKMGNHEELLLEDGFYAKLYKGQTDALT | 672 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci1g3880 | 672 | ProSitePatterns | ABC transporters family signature. | 607 | 621 | IPR017871 | GO:0005524|GO:0016887 | |
Prci1g3880 | 672 | Gene3D | - | 459 | 647 | IPR027417 | - | |
Prci1g3880 | 672 | CDD | ABC_6TM_TAP | 146 | 443 | - | - | |
Prci1g3880 | 672 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 469 | 672 | IPR003439 | GO:0005524 | |
Prci1g3880 | 672 | SUPERFAMILY | ABC transporter transmembrane region | 130 | 453 | IPR036640 | GO:0005524|GO:0016020 | |
Prci1g3880 | 672 | Pfam | ABC transporter | 487 | 635 | IPR003439 | GO:0005524 | |
Prci1g3880 | 672 | PANTHER | ABC TRANSPORTER B FAMILY | 114 | 646 | IPR039421 | - | |
Prci1g3880 | 672 | Pfam | ABC transporter transmembrane region | 144 | 365 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Prci1g3880 | 672 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 460 | 667 | IPR027417 | - | |
Prci1g3880 | 672 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 144 | 373 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Prci1g3880 | 672 | SMART | AAA_5 | 496 | 669 | IPR003593 | GO:0016887 | |
Prci1g3880 | 672 | Gene3D | ABC transporter type 1, transmembrane domain | 124 | 453 | IPR036640 | GO:0005524|GO:0016020 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci1g3880 | Prci-Chr1 | 54507494 | 54516571 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci1g3880 | 214 | 670 | Calmodulin-binding Proteins | AT2G36910 | 31.609 | 8.60e-59 | 213 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci1g3880 | - | - | pcin:129294067 | 1319.29 |