Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3879 ATGCTGAACGGCGAAAGGTGGCTTCCGAACCCACACCGGAAAATGTCCGTGAAGCCTTGCTCCCATTTCCCGCGAAGCAAAAGCTTTTCTTTCATTTACGGATCGAATAGTGTCACTTGCAAAACCAAAACCCCATTTTTATTTTCCTTTAAAAGCTTGCAAAGTGCTAATTCGAAGTGCTATAAGAGGTTTGAATGCAGGAATTTGAAAACTTCTTGCCAATTCTTTGTTTCAGAGAATGATAAGTACGACTATGTTGATTCTGGGTTACGGAAGGCGTTTTCCTTTGCCCGGTCGATTTCACCTGGTGGTAGCTGGTGGAACTTATCTGAACATAAGCAAGACAATGTTGAAGCGGCAAAGCCATTAACGGCGCTGCTTGCTCTTCGCCGGATGTGGGTTTTAATTTCCGGCGAGAGATGGATTTTATTTGTGGCTTTTGGTTCACTTGTTATTGCTGCCGTTTCAGAGATCTCCATGCCAAGTATACTGGCTGCGTCAATATTTTCAGCACAGAGCGGTGAGACCGTGGGTTTCTACCGGAAGGCACAGTCTTTACTTGTTCTGTGTTTCGCTTCAGGCATATGCAGTGGTCTGCGAAGTGGCTGCTTTGGAATTTTGAATGTAATCCTGGTAAAGCGTCTGCGAGAAAATCTGTATGCAGCTCTTCTTTTTCAGGACATATCCTATTTTGATAGAGAGCAGGGAACAGGAGCAGTAATTAATTTGCTGACTTTATCATGGCCTTTGGCATTGTCCGCCCTGGTGATTTGCTCTGTTTTATCTGCAATTTTCCTCGTTTATGGCCGGTATCAAAGAAAAGCAGCAAAGTTGACCCAAGATTTCACAGCTAGTGCCAATGAAGTAGCCCAGGAAACCCTTTCACTGGTTAGAACGGTCCGAACCTATGGTGCTGAAGTAGAAGAAGTTGGAAGGTACAAGCAATGGCTTCGGAGATTAGCATTTGTAAACACTAGAGAGAGTTTGGCTTATGGTTTTTGGAATCTGAGTTTTAACACCCTCTACCGTTCAAGTCAGACTAGAAGTGATGTGAAACGCAACATGCAGATATTTGCTGTGCTGTTAGGAGGGATGTCTGTTCTCTGTTGTTGTGTGACTGTGGAACAGCTTACTAAGTATGTGTTATACTGTGAGTGGCTGATATTTGCCACTTGGAGGGTGACAAATAGCTTGTCATCATTCCTGCAGTCCATTGGAGCATGTGAAAAAGTTTTTAAAATGATGGATCTTTTGCCCAGTGACCAATTTCTATCTAAAGGAGTGAAGTTGCAGAGGTTAAGGGGACGTTTTGAGTTTGTAAATGTATCATTTTGCTATCCTACGAGGATCATGGTTCCTGTTCTAGAACGCTTAAACTTTTCTGTAGAAGCAAATGAAGTGATTGCTATAGTTGGTGTTAGTGGCAGCGGAAAGAGCACATTACTCAACCTCTTACTTCGTTTATATGAGCCAAGTAATGGTCAGATTTACATTGATGGGTTTCCTCTCGGAGAATTGGATATCAGATGGCTGAGACAAAACATTGGATATATAGCACAGGAACCACATCTCTTTCACATGGACATTAAGTCAAACATAAAATATGGTTGCCCCAGAGACATTAAACAGGAAGATGTTGAACGAGCAGCAAAGCAGGCCTATGCTCATGACTTTATTTCATCATTTCCCAACGGCTACGAAACCATTGTTGATGATGACTCACTCAGTGGGGGGCAAAAGCAACGAATTGCCATTGCTAGGGCCATTCTTCGGGACCCAATTATTATGATACTTGATGAAGCAACCAGTGCTCTAGATCCTGAGAGTGAGCATTACATCAAGGAGGTTGTATATTCATTAAGAAGTGGATCTAAAGCAAGAACCATCATTATCATAGCACATAGGCTTTCTACCATAAAAGCTGCTGACAGGATCTTCGTAATGGATGGTGGTCGCATCATTGAGTGCTCGCAGATGGGTAACCACGAAGAACTTCTGCTTGAAGATGGGTTCTATGCAAAACTGTATAAGGGTCAAACAGATGCTTTGACTTGA 2055 0.4273 MLNGERWLPNPHRKMSVKPCSHFPRSKSFSFIYGSNSVTCKTKTPFLFSFKSLQSANSKCYKRFECRNLKTSCQFFVSENDKYDYVDSGLRKAFSFARSISPGGSWWNLSEHKQDNVEAAKPLTALLALRRMWVLISGERWILFVAFGSLVIAAVSEISMPSILAASIFSAQSGETVGFYRKAQSLLVLCFASGICSGLRSGCFGILNVILVKRLRENLYAALLFQDISYFDREQGTGAVINLLTLSWPLALSALVICSVLSAIFLVYGRYQRKAAKLTQDFTASANEVAQETLSLVRTVRTYGAEVEEVGRYKQWLRRLAFVNTRESLAYGFWNLSFNTLYRSSQTRSDVKRNMQIFAVLLGGMSVLCCCVTVEQLTKYVLYCEWLIFATWRVTNSLSSFLQSIGACEKVFKMMDLLPSDQFLSKGVKLQRLRGRFEFVNVSFCYPTRIMVPVLERLNFSVEANEVIAIVGVSGSGKSTLLNLLLRLYEPSNGQIYIDGFPLGELDIRWLRQNIGYIAQEPHLFHMDIKSNIKYGCPRDIKQEDVERAAKQAYAHDFISSFPNGYETIVDDDSLSGGQKQRIAIARAILRDPIIMILDEATSALDPESEHYIKEVVYSLRSGSKARTIIIIAHRLSTIKAADRIFVMDGGRIIECSQMGNHEELLLEDGFYAKLYKGQTDALT 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3879 684 FunFam Multidrug ABC transporter ATP-binding protein 429 683 - -
Prci1g3879 684 Gene3D ABC transporter type 1, transmembrane domain 126 240 IPR036640 GO:0005524|GO:0016020
Prci1g3879 684 Gene3D - 435 680 IPR027417 -
Prci1g3879 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 679 IPR027417 -
Prci1g3879 684 Pfam ABC transporter transmembrane region 239 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci1g3879 684 ProSitePatterns ABC transporters family signature. 575 589 IPR017871 GO:0005524|GO:0016887
Prci1g3879 684 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 144 341 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci1g3879 684 Gene3D ABC transporter type 1, transmembrane domain 241 434 IPR036640 GO:0005524|GO:0016020
Prci1g3879 684 SUPERFAMILY ABC transporter transmembrane region 130 421 IPR036640 GO:0005524|GO:0016020
Prci1g3879 684 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 437 675 IPR003439 GO:0005524
Prci1g3879 684 SMART AAA_5 464 652 IPR003593 GO:0016887
Prci1g3879 684 PANTHER ABC TRANSPORTER B FAMILY 235 676 IPR039421 -
Prci1g3879 684 Pfam ABC transporter 455 603 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3879 Prci-Chr1 54507494 54516571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3879 214 682 Calmodulin-binding Proteins AT2G36910 33.973 5.76e-69 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3879 - - pcin:129294067 1342.79