Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3873 ATGGGGCAAGTCCCGGCTCAATTTGTCAAGCACTTTGGTAAATATGGTGAGATTACAGATTCCGTAATAATGAAAGACCGGAAGACTGGGCAACCACGTGGATTTGGTTTTATAACTTATGCAGATCCCTCTGTGGTTGATAAGGTCATCGAGGATACTCATGTTATCAACGGCAAACAAGTGGAAATTAAGCGTACAATACCAAGAGGAGCTGTTGGCTCTAGGGATTTCAGGACAAAGAAAATTTTTGTGGGTGGAATTCCCTCGACTGTGACTGAAGACGAGTTCAGGGACTTCTTTACACACTATGGAGAGGTCAAAGATCACCAAATAATGCGAGATCATTCCACCAACCGCTCTCGTGGCTTTGGGTTTATTACTTTCGACTCTGAGGAAGCTGTTGAAGATCTCCTGTCTAAGGGGAACAAAATAGAGTTTGCTGGGGCTCAGGTGGAAATCAAAAAGGCTGAGCCAAAGAAACCAAACCCACCACCGGCCCCCTCCAAGCGCTATAGCGACTCAAGATCTTCATTTAGTGGTGGGTATGGGGATGCTTATGATGGATTTGGTGGCGGCGGCTTTGGTGTTGGGGGATATAGGGCAGGTGGTGTCTATGGTGGTAGGGGCGGTCCTTATGGTGGCTATGGTGGTGAATTTGGTGGGTATGGAGGATATGCTGGGGCCATGGGGCCTTACAGAGATCCCTCCCTTGGGTACTCTAGTCGATATGGGGGTGGGTTTAGCAGAGGTTACGATCTTGGAGGATATGGTGGACCTAGTGAGGGTTATGGGGGATACGGTGGTGTTGGTTCTTCAGGTGGTGCCTATGGAAGTGGCTATGATGCTAGCCTGGGGGGCGGATATGGTGGTGGCAGTGGCAGTGGCAGTAGCGTTGGAGGTTCCTTTTATGGGAGTAGAGGTGGATATGGTGGTGCAGGGTCTGGTCGATATCATCCTTACGGGAGATAG 969 0.4943 MGQVPAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAVGSRDFRTKKIFVGGIPSTVTEDEFRDFFTHYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVEDLLSKGNKIEFAGAQVEIKKAEPKKPNPPPAPSKRYSDSRSSFSGGYGDAYDGFGGGGFGVGGYRAGGVYGGRGGPYGGYGGEFGGYGGYAGAMGPYRDPSLGYSSRYGGGFSRGYDLGGYGGPSEGYGGYGGVGSSGGAYGSGYDASLGGGYGGGSGSGSSVGGSFYGSRGGYGGAGSGRYHPYGR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3873 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 68 IPR000504 GO:0003723
Prci1g3873 322 SUPERFAMILY RNA-binding domain, RBD 76 188 IPR035979 GO:0003676
Prci1g3873 322 SUPERFAMILY RNA-binding domain, RBD 8 71 IPR035979 GO:0003676
Prci1g3873 322 FunFam Heterogeneous nuclear ribonucleoprotein 1 71 194 - -
Prci1g3873 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Prci1g3873 322 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 6 322 - -
Prci1g3873 322 FunFam - 4 66 - -
Prci1g3873 322 Gene3D - 5 71 IPR012677 -
Prci1g3873 322 SMART rrm1_1 1 64 IPR000504 GO:0003723
Prci1g3873 322 SMART rrm1_1 81 154 IPR000504 GO:0003723
Prci1g3873 322 Gene3D - 80 163 IPR012677 -
Prci1g3873 322 MobiDBLite consensus disorder prediction 152 176 - -
Prci1g3873 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 61 IPR000504 GO:0003723
Prci1g3873 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 150 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3873 Prci-Chr1 54485394 54489422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3873 12 211 Eukaryotic Initiation Factors Gene Family AT2G23350 26.027 9.29e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3873 K12741 K14314 gmx:100813165 305.064