Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3872 ATGGAATCACCCATTAACGACCCCGCCGTTGACGGAGAAACCAACGATGTGAGGTCCTTAGGCCACAGAGAAGAAGAGGAGGATAAGTCTCAGCCTCTTACTGGCGATGGGGCAAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACAATTGCTCAATTTGTCAAGCACTTTGGTAAATATGGTGAGATTACAGATTCCGTAATAATGAAAGACCGGAAGACTGGGCAACCACGTGGATTTGGTTTTATAACTTATGCAGATCCCTCTGTGGTTGATAAGGTCATCGAGGATACTCATGTTATCAACGGCAAACAAGTGGAAATTAAGCGTACAATACCAAGAGGAGCTGTTGGCTCTAGGGATTTCAGGACAAAGAAAATTTTTGTGGGTGGAATTCCCTCGACTGTGACTGAAGACGAGTTCAGGGACTTCTTTACACACTATGGAGAGGTCAAAGATCACCAAATAATGCGAGATCATTCCACCAACCGCTCTCGTGGCTTTGGGTTTATTACTTTCGACTCTGAGGAAGCTGTTGAAGATCTCCTGTCTAAGGGGAACAAAATAGAGTTTGCTGGGGCTCAGGTGGAAATCAAAAAGGCTGAGCCAAAGAAACCAAACCCACCACCGGCCCCCTCCAAGCGCTATAGCGACTCAAGATCTTCATTTAGTGGTGGGTATGGGGATGCTTATGATGGATTTGGTGGCGGCGGCTTTGGTGTTGGGGGATATAGGGCAGGTGGTGTCTATGGTGGTAGGGGCGGTCCTTATGGTGGCTATGGTGGTGAATTTGGTGGGTATGGAGGATATGCTGGGGCCATGGGGCCTTACAGAGATCCCTCCCTTGGGTACTCTAGTCGATATGGGGGTGGGTTTAGCAGAGGTTACGATCTTGGAGGATATGGTGGACCTAGTGAGGGTTATGGGGGATACGGTGGTGTTGGTTCTTCAGGTGGTGCCTATGGAAGTGGCTATGATGCTAGCCTGGGGGGCGGATATGGTGGTGGCAGTGGCAGTGGCAGTAGCGTTGGAGGTTCCTTTTATGGGAGTAGAGGTGGATATGGTGGTGCAGGGTCTGGTCGATATCATCCTTACGGGAGATAG 1116 0.4919 MESPINDPAVDGETNDVRSLGHREEEEDKSQPLTGDGASPGKIFIGGLARETTIAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAVGSRDFRTKKIFVGGIPSTVTEDEFRDFFTHYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVEDLLSKGNKIEFAGAQVEIKKAEPKKPNPPPAPSKRYSDSRSSFSGGYGDAYDGFGGGGFGVGGYRAGGVYGGRGGPYGGYGGEFGGYGGYAGAMGPYRDPSLGYSSRYGGGFSRGYDLGGYGGPSEGYGGYGGVGSSGGAYGSGYDASLGGGYGGGSGSGSSVGGSFYGSRGGYGGAGSGRYHPYGR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3872 371 Gene3D - 41 120 IPR012677 -
Prci1g3872 371 SUPERFAMILY RNA-binding domain, RBD 38 120 IPR035979 GO:0003676
Prci1g3872 371 FunFam Heterogeneous nuclear ribonucleoprotein 1 40 121 - -
Prci1g3872 371 SMART rrm1_1 42 113 IPR000504 GO:0003723
Prci1g3872 371 SMART rrm1_1 130 203 IPR000504 GO:0003723
Prci1g3872 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Prci1g3872 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Prci1g3872 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Prci1g3872 371 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 24 371 - -
Prci1g3872 371 MobiDBLite consensus disorder prediction 201 225 - -
Prci1g3872 371 SUPERFAMILY RNA-binding domain, RBD 126 237 IPR035979 GO:0003676
Prci1g3872 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Prci1g3872 371 Gene3D - 129 212 IPR012677 -
Prci1g3872 371 MobiDBLite consensus disorder prediction 16 32 - -
Prci1g3872 371 FunFam Heterogeneous nuclear ribonucleoprotein 1 122 243 - -
Prci1g3872 371 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3872 Prci-Chr1 54485394 54489493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3872 23 260 Eukaryotic Initiation Factors Gene Family AT2G23350 24.903 1.67e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3872 K12741 - gmx:100813165 370.933