Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3850 ATGTGGAAATCATTATATCTGACTCACGCATCGTTCCTCTTCTTATCTAATTCTAGAGCTATGGCCTCTGCAAGAGTTTTCTATCATACGCTTCCATGTACAAAATTCACACCCTTCAACAAAGTAGACACTTTCTCCCTATCACCTTCCTTACGAACCTTCGCCACCACACGAACCCCATACCCACTTCAGTACGAGATGATTATCAACCGTCCGGTCAATTCTGTGCATGCCCATTCTCGCCGTCGACCTGTTCGACAAAATGACTCCAATTCAGAGAGCTTTCCTGACTCCGATTCTCCTGAAGAGTCTGTTTCTCCGGAGGAGTCCGTTTCTGAATTGGGATTAGATAGCTGGGTCGATCGGAAATTGGCTTTTGAGAAGGAAGCTGACCAACCCAGTTCCCAAAAATTGGAGCTTGACAAGGCTAAGAGAAAATATTACAGAAAACGGAGGAAGAGGATGTATGGGTCGGACTCAGATGAAGAAAATAGACGACCTGAAGAGAAGTTCGTGGAACTGAAGCCTGAGGTGGTTGAGCTTCCTACATTGCACAAGAGGGAGGAGGAATTGTATTTCTACGATACGTTTTCTTACCCGTGGGAAAAGGAGAAGCATTACAAGATGGTCTATCAGTTAGAGAAGAAATATTTTCCTGATCAGTGTCTTGACAAAGCGTTCCTTGAACCGGGAGAATCAAATGCAAATGTGAATGAAAATACAGATATGAAGACTAAGAGTAAGGTGAGGGAAAAGAAGAAAATCAGGGAAGATAAAAGGGAGAAAAAAGACGAAATTGGTAATGAAAGAACTGATAAGAAGTTAATATTCTTCGAGGAGAAACAAGAAGAAGAAAAGGATAATAGAGGATTGGTTAAGGAAACAAGAGAAGATCTAACCGAAAAGAAGGTCGAAGAGTTCTTTAAATATTTGAAGAAAATTCCCGATAAGGATGTTGAAATGGGTAATGCTGAGCCGTTTCTTGCGTCAAGAAGTTCTGGGCTTCCTCCTAGATGGGATGGTCCTCATGGAACCGTTGTTTTGGTGAACAAACCCAAAGGCTGGACTTCATTTACAGTTTGCGGGAAGCTGCGTCGCCTAGTCAAAGTGAAAAAGGTAGGTCATGCTGGAACTCTTGATCCTATGGCTACGGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAACTGGTAGAGAGATATCAAGGGATGATTAAGGGCTATAGCGGGGTTTTCCGCCTAGGGGAGGCTACTTCAACATGGGATGCTGATTCAGCGGTCATTCAGCGGGAGCCATGGGAGCACATCAAAGATGAAGACATAAAGAGAACTGCAGCATCCTTTTGCGGGGAGATTTGGCAAATTCCCCCAATGTTCTCTGCCATTAAAGTTGGAGGTGAGAAAATGTACGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTCTCGCCTCGACGAATATCAATTTTCCAGTTTGGCATAGAGCGTAGTTTGGATGATAGACAAAATTTGATTTTTAGGGTAACATGTTCCAAAGGGACGTATATTCGGTCCCTATGTGCAGATTTTGGGAAAGCTCTTGGCAGTTGTGCCCATTTAACTGCTCTCCGGAGAGATTCAATAGGAGAATATTCAGCAGATGATGCATGGGACTTTGCAGAGCTTGAAGAGGCTATTTCCAAAAGTTATTTCTAA 1692 0.4291 MWKSLYLTHASFLFLSNSRAMASARVFYHTLPCTKFTPFNKVDTFSLSPSLRTFATTRTPYPLQYEMIINRPVNSVHAHSRRRPVRQNDSNSESFPDSDSPEESVSPEESVSELGLDSWVDRKLAFEKEADQPSSQKLELDKAKRKYYRKRRKRMYGSDSDEENRRPEEKFVELKPEVVELPTLHKREEELYFYDTFSYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLEPGESNANVNENTDMKTKSKVREKKKIREDKREKKDEIGNERTDKKLIFFEEKQEEEKDNRGLVKETREDLTEKKVEEFFKYLKKIPDKDVEMGNAEPFLASRSSGLPPRWDGPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVERYQGMIKGYSGVFRLGEATSTWDADSAVIQREPWEHIKDEDIKRTAASFCGEIWQIPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFGIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGEYSADDAWDFAELEEAISKSYF 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3850 563 FunFam tRNA pseudouridine synthase B 340 562 - -
Prci1g3850 563 Pfam TruB family pseudouridylate synthase (N terminal domain) 365 515 IPR002501 GO:0006396
Prci1g3850 563 MobiDBLite consensus disorder prediction 243 265 - -
Prci1g3850 563 MobiDBLite consensus disorder prediction 76 114 - -
Prci1g3850 563 MobiDBLite consensus disorder prediction 89 107 - -
Prci1g3850 563 SUPERFAMILY Pseudouridine synthase 345 557 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Prci1g3850 563 CDD PseudoU_synth_EcTruB 346 557 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Prci1g3850 563 Pfam tRNA pseudouridylate synthase B C-terminal domain 516 559 IPR032819 -
Prci1g3850 563 MobiDBLite consensus disorder prediction 232 265 - -
Prci1g3850 563 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 216 561 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Prci1g3850 563 Hamap tRNA pseudouridine synthase B [truB]. 343 563 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Prci1g3850 563 Gene3D Pseudouridine synthase 341 562 - -
Prci1g3850 563 NCBIfam tRNA pseudouridine(55) synthase TruB 345 554 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3850 Prci-Chr1 54381250 54386008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3850 318 537 NAC Transcription Factor Family AT3G57150 32.273 2.73e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3850 K03177 - qsa:O6P43_004707 815.839