Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3824 ATGGCCTATTATCTTCCACTCTTTCTCCTTTTCTCTACTCTCTCTCTCCTCTCATCACTTGTTTCCTCCTCAGCAGTTCCACACCCTGACCTAGTCGCCCAAGACGTACACAGGCGAATCAATGCGTCCAGAAGAAACCTGGGCTATTTGTCTTGCGGAACCGGGAACCCCATAGATGACTGCTGGCGTTGCGACCCGAATTGGGAGAAAAACCGGCAAAGGCTGGCCGATTGCGCCGTCGGGTTTGGTAAGGACGCCGTTGGCGGAAGAAACGGCCGAATCTACGTCGTCTCGGACTCGGGGGACGACGACCCAGTGAACCCCAGGCCAGGTACTCTCAGACACGCCGTCATACAGGAGGAGCCACTGTGGATAGTCTTCAACAGAGACATGGTGATCAATCTGAAGCAAGAGCTTGTCATGAACTCCTTCAAGACCATCGACGGAAGAGGATCCAGTGTTCATATTGCCGGCGGCGGCTGCATCACCATCCACTACGTCAACAACGTCATCATTCACGGCATTCACATCCACGACTGTAAGCCCACGGGGAATGCCGAGATCAGAGACTCTCCCACCCACTCTGGATTCTGGACGGTGTCGGACGGCGACGGCATCTCTATCTTTAACTCGAAGCACGTGTGGGTTGACCATTGTTCCTTATCTAACTGCCACGACGGGCTCATCGACGCCATCCACGGTTCAACGGCCATCACCATCTCCAACAACTACATGACCCATCACGACAAGGTGATGCTGTTGGGCCACAGTGACGAATACACGCAGGACAAGGACATGCAGGTGACTCTGGCGTTCAATCACTTCGGAGAAGGGCTCGTGCAGAGAATGCCGAGGTGCAGGCACGGGTACTTTCATGTGGTAAACAACGACTACACTCACTGGGAGATGTACGCCATTGGAGGGAGTGCAGATCCTGCCATTAACAGCGAAGGGAATAGGTTTCTCGCCCCAGATGATAGGGCTAGCAAGGAAGTGACGAAACACGAGGATGCTCCAGAGAGCCAGTGGATGGACTGGAATTGGAGATCGGAAGGTGATCTTTTCTTGAATGGGGCATTCTTCAGGCAATCTGGTGCCGCCGCTTCTTCACCCTATGCTAGAGCCTCCAGCCTCAGTGCTAGGCCGTCTTCTCTGGTTGGTTCTATCACCATCAGTGCTGGTGCACTTAACTGCAGAAAGGGCAGTCGTTGCTGA 1215 0.5391 MAYYLPLFLLFSTLSLLSSLVSSSAVPHPDLVAQDVHRRINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAVGFGKDAVGGRNGRIYVVSDSGDDDPVNPRPGTLRHAVIQEEPLWIVFNRDMVINLKQELVMNSFKTIDGRGSSVHIAGGGCITIHYVNNVIIHGIHIHDCKPTGNAEIRDSPTHSGFWTVSDGDGISIFNSKHVWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDEYTQDKDMQVTLAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPAINSEGNRFLAPDDRASKEVTKHEDAPESQWMDWNWRSEGDLFLNGAFFRQSGAAASSPYARASSLSARPSSLVGSITISAGALNCRKGSRC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3824 404 Gene3D - 55 397 IPR012334 -
Prci1g3824 404 Pfam Pectate lyase 136 321 IPR002022 -
Prci1g3824 404 SMART amb_all 130 327 IPR002022 -
Prci1g3824 404 SUPERFAMILY Pectin lyase-like 34 398 IPR011050 -
Prci1g3824 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Prci1g3824 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Prci1g3824 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Prci1g3824 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Prci1g3824 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Prci1g3824 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Prci1g3824 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Prci1g3824 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Prci1g3824 404 PANTHER PECTATE LYASE 18-RELATED 36 402 IPR045032 GO:0030570
Prci1g3824 404 FunFam Pectate lyase 55 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3824 Prci-Chr1 54246064 54247642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3824 4 404 Polysaccharide Lyase AT5G63180 74.321 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3824 K01728 - qsa:O6P43_008865 694.501