Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3820 ATGGAGGGTATAGAACCTGATATAAAAAGCCATCCACCAGAATATGATGTGCAAAATGAAGGTCAAACATCTGGAGCAGCAACTGACACCGGACAGCAGAGTCAAAGCCCCAGGGCTTCTTCAATTGCAGATTGTGACATGGTCTTTGATACTGAGAATGAGCGCGCAAGCCCAAATATTGGTCCTGTTGACCAAACTCATATGGGAAATAATGATGATTGTCTGAATTCAAGCATTTCTTGTGATAACAATTTTCAGATTGATGCTGCAAATGGAAATCTGTCTCAGGAATTCAACATTTCTTCTGTTGATGTGTCAAGTAACAGTAATGTCATAACAGCTGAGGAGGAGCTGTGCATGATACCAAAAATTGGCATGGAGTTTGATTCAGAAGACCATGCTTACAAGTATTATAGCAGGTATGCTGTTTTGAAAGGTTTCAGCATAAGAAAAGATTTTGTCAACAAAAGTAGGGTGAATGGTGCGGTGGTATCTAGAAGATACACTTGCTATAGACAGGGTTATGGGCCTAATAAACATAGTGCCAATGTAAGGAAATCCCATCTGGAAACAAGGACTGGATGCCTGGCGCATATGACTATTGCTCGTCAGCCTAATGGCAAGTTTCATGTCACTCATTTTGAAGCAGGGCACAATCATGAGTTTGCAACACCCTGTACGGCTTATATGTTACCATCACAGAGAAGATTGAGTTTTGCTCAAGCAGTTGAATCTAACTTGTCTAATAATTCTGTGTTGGATGGGGTACCAAAACTTGGAATGGGATTTGACTCAGAAGATCATGCATATGACTTTTATAATACATATGCTGGACGTGTAGGTTTCAGTGTTCGGAAAGATTATGTAAATAGAAGTAAAATTGATGGTGCTGTCGCATCTAGGAGGTTCACATGCTTTCGGGAAGGTTTTCGGCAGAAAGACAAACGTGATATGACTGTGAAGAGGCCTCGAAAAGAGACTAGAATTGGATGTTTAGCACAACTGGTCATTTCTCGTCAGCCTGATGGTAGATATTGTGTAACTCATTTTGAAGAAAAGCATAATCATGAGCTTGTTGCTGCTTGTAGAGTTCACATGTTACGATCACAGAAGAGAATAGCCACAAATCAAGCCATTGAGAGCAACATGCTAGATGGTTCCAAGGTGCATCCTAAGTCTGGACCAAATTGCAAGGCTATTAAAGGTTTAGATGATACGGGTTGTGACCCCATAGAATATGGAAATAAATTGCCTTTCAAGCACACAAGAGAAATGAAAGAGGGAGAAATTGAAAAGCTAAAGCATCACTTTCGAAGCAAGCGATCCAAAAATCCTTCCTTCTTTTATGCCTTCCAACGTGATTCTAGTGATCAAATAACTAATATGTTTTGGGCAGACACAAAGATGGTAGGAGACTACTGTGATTTTGGTGATGTTGTTTGCTTTGATTGTAGTTACAGATTTTGTAGAGACTCCCGCCCATTTGCTCCATTTCTTGGTGTCAATAATCACAAGCAAATGGTTATCTTTGGGGCTGCACTTCTATATGATGAAACAGTTGAATCTTTCAAGTGGCTATTTCAAGTTTTCTTGGAGGCAATGTCCAGGAGACAGCCAAAGACAATTCTTATAGATCAAGATGAAATAATAGCTGAAGCAGTCTCTTCTGTCTTGCTTGAAACCAACTGCCAAATCTGTGCTTGGCATGTGTACCAAAATACACTAAATCAACTCAGTCACCTGTCTGTGGGATCTAATTCTTTTGTTAATGACTTGAGAAGCTGTTTTTTTGATCACGAGGAGGAGGAAGGCTTGGTTAATGCATGGAATGATTTCCTGAACAGGTATAATCTTTGGAAAAATGAATGGTTGTGTCGAATATATGAAAGCAGAGACAATTGGGCCCCAGCATATGGAAGGCAAAATTTCTGTGCTGACATAACAAGTCTGCTGTGGAAAGAAAATCTTATTGGTAGCTTGAAGAAGCACCTAACGAATGATACAGATGTGATCTCATTTCTCAAGCATCTTGGGAAGGTGGTGACTGATTGGCACTATAAGGAATTAGAAGCCAATTATGATATGAGCCTGCGTATGCCAGCACTGATGGGAGATGTGATTCTTTTGAAGCATGCAAGAGATCCATACACACCAAAGATATTTGAATTATTTCAGAAAGAATATGAAACTTGTTTAAATCTAGTGATAAAGCATTGCAGTGAGAGTGGATCATTGTACAAGTATAAAGTTAGCTTATATGAACACGTACGAGAGTATACAGTTACCTTTAATTCATCTAACGAGACTGTCAGTTGCAGCTGTATGAAATTTGAGTCCATGGGAGTCTTATGCAGCCATGCATTGAAAGTCCTTGATTACAGGAATATAAGGATACTTCCATCATTGTACATCTTAAAGAGATGGACAAAAGACGCGAGTTTTTTGAGGCAAACTTGA 2457 0.3948 MEGIEPDIKSHPPEYDVQNEGQTSGAATDTGQQSQSPRASSIADCDMVFDTENERASPNIGPVDQTHMGNNDDCLNSSISCDNNFQIDAANGNLSQEFNISSVDVSSNSNVITAEEELCMIPKIGMEFDSEDHAYKYYSRYAVLKGFSIRKDFVNKSRVNGAVVSRRYTCYRQGYGPNKHSANVRKSHLETRTGCLAHMTIARQPNGKFHVTHFEAGHNHEFATPCTAYMLPSQRRLSFAQAVESNLSNNSVLDGVPKLGMGFDSEDHAYDFYNTYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRDMTVKRPRKETRIGCLAQLVISRQPDGRYCVTHFEEKHNHELVAACRVHMLRSQKRIATNQAIESNMLDGSKVHPKSGPNCKAIKGLDDTGCDPIEYGNKLPFKHTREMKEGEIEKLKHHFRSKRSKNPSFFYAFQRDSSDQITNMFWADTKMVGDYCDFGDVVCFDCSYRFCRDSRPFAPFLGVNNHKQMVIFGAALLYDETVESFKWLFQVFLEAMSRRQPKTILIDQDEIIAEAVSSVLLETNCQICAWHVYQNTLNQLSHLSVGSNSFVNDLRSCFFDHEEEEGLVNAWNDFLNRYNLWKNEWLCRIYESRDNWAPAYGRQNFCADITSLLWKENLIGSLKKHLTNDTDVISFLKHLGKVVTDWHYKELEANYDMSLRMPALMGDVILLKHARDPYTPKIFELFQKEYETCLNLVIKHCSESGSLYKYKVSLYEHVREYTVTFNSSNETVSCSCMKFESMGVLCSHALKVLDYRNIRILPSLYILKRWTKDASFLRQT 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3820 818 Pfam FAR1 DNA-binding domain 271 359 IPR004330 -
Prci1g3820 818 Pfam FAR1 DNA-binding domain 136 223 IPR004330 -
Prci1g3820 818 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 106 241 IPR031052 GO:0006355
Prci1g3820 818 ProSiteProfiles Zinc finger SWIM-type profile. 759 795 IPR007527 GO:0008270
Prci1g3820 818 SMART 26again6 770 797 IPR006564 GO:0008270
Prci1g3820 818 Pfam MULE transposase domain 479 573 IPR018289 -
Prci1g3820 818 Pfam SWIM zinc finger 759 794 IPR007527 GO:0008270
Prci1g3820 818 MobiDBLite consensus disorder prediction 16 41 - -
Prci1g3820 818 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3820 Prci-Chr1 54198080 54201999 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Prci1g3820 MULE 1.4e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3820 K17604 - gmx:102659753 1149.81