Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3817 ATGGGAAGGCAGCCTTGTTGTGATAAGGTTGGTTTGAAGCGAGGCCCTTGGACCATTGAGGAAGATCACAAGCTCATCAACTTCATCCTCAACAATGGCATCCATTGCTGGCGTATGGTTCCCAAGCTTGCAGGTCTGCTGCGATGTGGAAAGAGCTGCAGATTGAGATGGATCAATTATCTGAGGCCAGACCTCAAGAGAGGCGGCTTCACGGATACGGAAGAGGATCAAATTATTCAGCTACATTCACGTCTTGGTAACAGGTGGTCTAAGATTGCTGCACATTTTCCTGGGAGGACGGACAATGAAATCAAGAACCATTGGAACACGAGGATCAAGAAGAAGATGAAGCTGATGGGTCTCGACCCTGTGACACACACGCCGATCGAGCAAATACAAAAGCAAGAAGTCAGCGATAATAGGAAACAAAGAAGCCAATCAAGGCCGAGTTTTTCCACAGGGTCGGAAGAAAATGTGGAGATGATAATGAAGTCCTCGGACAGTAGCGGCTGCACACTACAAGTTGTTTCAGAAGAACAAGGGAACAAGGTAGAATTAAACAAGGTGACTTGGGATGATCTTACCTATGATCTTCCAAACAAAAACGAAATAATATGCTCCGACTTGGACCTGGGATCGAGGACGAACCAAGAGAAGAATGCCAGTACTGGCTCTTTTAGTGGCTCGTCTTTTTCTCTGGAAGATTCTAGCCACCTTTCCATGAGCGAATCTTCTTACCTGGGGGAAAACTCGTTACTGGAATGGGTCGATAGTATTAGCATGGAATCCATTCTCGAATGGGATGGCTTCGATCCTTTGATGGATCAGGATGTTTTCTGCTTTGGAAATAGATAA 855 0.4573 MGRQPCCDKVGLKRGPWTIEEDHKLINFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTDTEEDQIIQLHSRLGNRWSKIAAHFPGRTDNEIKNHWNTRIKKKMKLMGLDPVTHTPIEQIQKQEVSDNRKQRSQSRPSFSTGSEENVEMIMKSSDSSGCTLQVVSEEQGNKVELNKVTWDDLTYDLPNKNEIICSDLDLGSRTNQEKNASTGSFSGSSFSLEDSSHLSMSESSYLGENSLLEWVDSISMESILEWDGFDPLMDQDVFCFGNR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3817 284 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 209 - -
Prci1g3817 284 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci1g3817 284 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci1g3817 284 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci1g3817 284 FunFam MYB transcription factor 11 67 - -
Prci1g3817 284 CDD SANT 16 61 IPR001005 -
Prci1g3817 284 Gene3D - 69 150 - -
Prci1g3817 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci1g3817 284 FunFam MYB transcription factor 68 129 - -
Prci1g3817 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci1g3817 284 MobiDBLite consensus disorder prediction 144 158 - -
Prci1g3817 284 CDD SANT 70 110 IPR001005 -
Prci1g3817 284 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Prci1g3817 284 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci1g3817 284 Gene3D - 11 67 - -
Prci1g3817 284 SMART sant 66 114 IPR001005 -
Prci1g3817 284 SMART sant 13 63 IPR001005 -
Prci1g3817 284 MobiDBLite consensus disorder prediction 133 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3817 Prci-Chr1 54185637 54187249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3817 1 170 MYB Transcription Factor Family AT1G66230 63.584 3.28e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g3817 Myb_DNA-binding 2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3817 K09422 - gmx:100783231 365.925