Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3816 ATGTCACCCCAGTTTTCCGAGGTGCAGGCAGCCATGAAAGATCGTCGCCGACGTGACTCCCCCGCCCTTTCATGGATCTCCTTCTTCTGGTGCACCCTCTTCGTCGTCCTCTCTTCCGCCATCCTCACCTCCCTCGCCACTCTCCGTCGCTTCTATTCCCAAGATCCGCCTCACCCGAGCGCCCTCCTCTCACGCCAAACCTGGGTCCTGCAAGCCAAATCCAGCCACTCCTCCCACACTCCCGCTCTTACGGTTCGAGAAACGGTCGTGCTCCCGAATCAGGCTCTTGTTTTCCTGAATTACCCCCCATCTTTCCGCTTTTATACCCCAGATGACATCCAGTGCGTATATTCCTGGCCCAACTCCTCCACCACTCGCGAGCCTCCGCTTCAAATAGAGCCCACCCATGCTCGCGAGCACATGGTTCGGTGCCCGATCCACCCGCTCCGCCTCAACGTCTCCCTCGCCGTCCAATCCAAGGTTTCTTTCCGTCCCAATTACAAGTGGCACCCGCTCGTCTACGAGGCCCTGTTCGACAGCGACAACACCACCATCGTCTTCGTCAAGGGCTTCAACCTTCGTCCCGCCAGAGAAGCCGACCCTTCCAGATTCCAGTGCCTCTTCGGCTGGGATTTCAACTCCCCCAAGTATCTCCTCACCTCCGACGTCATTTCCGTCGCCCAGGAGATCATCCGCTGCAGAACCCCTTCCAGCATTCTCACTAGCCACCCCAGGGTGAGATCTTCCTTCAAGGTTTCAGTCAGGGCGGTCGGCAGAAAAGTACTGCCCACCATAGCCATGCCAGGTCTCCGGCCTCGACTTGGCCCGCCATCCCCGAAACGCCACGTAATGTGCGTGTGCACCATGTTACGGAACCAGGCCCGGTTCATCAAGGAGTGGATAATGTACCATACTCGAATCGGGGTCCAAAGGTGGTTCATCTACGACAACAACAGCAGCGACGATATCATCGCCGTGATTGCGCTCCTACGGCGAGCCCGATACAACATCACGCGCCACGTGTGGCCGTGGATTAAGACCCAGGAAGCCGGGTTCGCTCACTGTGCATTACGGGCACGAGACGTGTGCGAGTGGGTTGGCTTCATCGACGTGGACGAGTTCTTCAACCTGAAAATAGAAGAGAACCTGGAAGGAGCGATCCTGCGGGAAACGAGCGAGTTCAAGAACGCGGGGGAGATACGGACGAGCTGCTTCAGTTTCGGACCGTCGGGGCTGAAGAAGATACCTCGCGAGGGAGTGATGGTGGGGTACACGTGCAGGATGGCGGAGAGGGAGAGGCACAAGAGCATAGTGAGGCCGGAAGCGTTGAATGAGAACCTGATAAATGTGGTGCACCACTTTCATCTGAAGGAAGGGTACGTGACGGTGGACGCTGACCGGAGCGCGATGGTGATAAATCATTACAAGTACCAGGTGTGGAAGGTGTTCAAAGACAAGTTCCAGAGGAGGGTGTCCGCCTACGTGGTTGATTGGAAGAGAAGAGAGAACGTAGGGTCCAAGGATAGAGTACCCGGCTTAGGGAGCAGCGCGGTGGAGCCGCCCAATTGGGCGAACCGGTTCTGCGAAGTCTGGGACACGGGTCTGAAGAACCGGGTAGTGCAGGTGTTCATGGACCCGACCAATCGTCTGCTTCCGTGGCAACCGAAGGAAGAGCTTGAGCAGCATCTTAGGAAACCACGAAGGAGGAGACGAAGGCAGAGAGGAGTCTCCACCAAGCAAAACGACACCCAACGAACTTTCCGGGGGGAAATGGTGAGCCAAGAACAAAGACGCAGCCCACAAGACCAAAAGAACCCATCCAGAGAAGCAAAGCCATTGGAAAATGGAGACAACTTGGGCGGCATGTTCAGCCCCAGATTCAAATCGGCTGCCGCTTTGGCTGGTTGGGACGAGGAGACCCTGCTATTCGCCAGCCTCGTCGTCGAAGACACCCCGGACAGACCTCCTAAGCATCGCAAACACTTTGATTTTAACATCAAGACTCCACCTGCCTCTTCAAGAAGGAAACGCAGAGCTCAACGGAGTCCACATCCAATCCCAGCTACTGTGCTTGACCTCGAACAAGATGAAACTCCCGGAAAGGATATTGCCAAAAAGAAGAAAGAAAACAGAACCAGTGCTAACGAAGTGGAAGAGAATAAATTGACGCAGCAGACCTCTAGTTCTTCTTCTTCTTCATCTCCTTCAGGATCTGCTCTTCCCTGCATTGATAAACTCAGGGAGGAGCTTTCCTGCGCTATTTGCTTGGAGATATGCTTTGAACCAAGCACTACACCTTGTGGGCACAGCTTTTGTAGAAAATGCCTTCGATCTGCAGCGGATAAATGTGGAAGAAAGTGCCCAAAATGCAGACAACTGATAAGTAATGGACGATCGTGCACCGTGAACACAGTTCTCTGGAATACAATACGGCTCCTTTTCCCCAAGGAAGTGGAAGCAAGGAAAGCAGCAGGTGCCTTGAATGTTCGGGAAGCCCAGCGGGGCACGACTCCAGAAACAGCATTCTATGATAGTCTCAGGAACCGAAGCACACGAACATCTGAGGCACCGAGCAGAGGCACAACTAGTTTGAGGAGAAGAGGTGTCACGAGAATTCAAGACGAGGATGAAGATGCTGCATTGGCAAGAAGGTTGCAGAGGGAGGAAAGTTGGGTGGTTCAGAATAATAATTCAAGCAATCAGACTCCGTCATCGTCGTCTTCAAGAGGGAGGTCAAGGAGAAGGATAACGAGCCAAGACGAGGATGCTGCTTTGGCTCTGACGTTGCAGAGGGAAGAGTTTATGCAGGCTTTCAGGGGAAGCCAAGGGCCTTCTGACACAAGTGTGTCTATGTCTTCAGCCAGAGCGAATTTGAGGGCCATGGCATCCAGAGCCGTTAATCTTAGAATTAGAGCCCGAAATCCCCTTTGA 2931 0.5404 MSPQFSEVQAAMKDRRRRDSPALSWISFFWCTLFVVLSSAILTSLATLRRFYSQDPPHPSALLSRQTWVLQAKSSHSSHTPALTVRETVVLPNQALVFLNYPPSFRFYTPDDIQCVYSWPNSSTTREPPLQIEPTHAREHMVRCPIHPLRLNVSLAVQSKVSFRPNYKWHPLVYEALFDSDNTTIVFVKGFNLRPAREADPSRFQCLFGWDFNSPKYLLTSDVISVAQEIIRCRTPSSILTSHPRVRSSFKVSVRAVGRKVLPTIAMPGLRPRLGPPSPKRHVMCVCTMLRNQARFIKEWIMYHTRIGVQRWFIYDNNSSDDIIAVIALLRRARYNITRHVWPWIKTQEAGFAHCALRARDVCEWVGFIDVDEFFNLKIEENLEGAILRETSEFKNAGEIRTSCFSFGPSGLKKIPREGVMVGYTCRMAERERHKSIVRPEALNENLINVVHHFHLKEGYVTVDADRSAMVINHYKYQVWKVFKDKFQRRVSAYVVDWKRRENVGSKDRVPGLGSSAVEPPNWANRFCEVWDTGLKNRVVQVFMDPTNRLLPWQPKEELEQHLRKPRRRRRRQRGVSTKQNDTQRTFRGEMVSQEQRRSPQDQKNPSREAKPLENGDNLGGMFSPRFKSAAALAGWDEETLLFASLVVEDTPDRPPKHRKHFDFNIKTPPASSRRKRRAQRSPHPIPATVLDLEQDETPGKDIAKKKKENRTSANEVEENKLTQQTSSSSSSSSPSGSALPCIDKLREELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGRKCPKCRQLISNGRSCTVNTVLWNTIRLLFPKEVEARKAAGALNVREAQRGTTPETAFYDSLRNRSTRTSEAPSRGTTSLRRRGVTRIQDEDEDAALARRLQREESWVVQNNNSSNQTPSSSSSRGRSRRRITSQDEDAALALTLQREEFMQAFRGSQGPSDTSVSMSSARANLRAMASRAVNLRIRARNPL 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3816 976 MobiDBLite consensus disorder prediction 891 918 - -
Prci1g3816 976 Pfam Zinc finger, C3HC4 type (RING finger) 752 790 IPR018957 GO:0046872
Prci1g3816 976 MobiDBLite consensus disorder prediction 717 738 - -
Prci1g3816 976 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 821 IPR013083 -
Prci1g3816 976 MobiDBLite consensus disorder prediction 847 876 - -
Prci1g3816 976 ProSitePatterns Zinc finger RING-type signature. 767 776 IPR017907 -
Prci1g3816 976 MobiDBLite consensus disorder prediction 847 867 - -
Prci1g3816 976 SMART ring_2 752 790 IPR001841 -
Prci1g3816 976 MobiDBLite consensus disorder prediction 651 665 - -
Prci1g3816 976 Pfam Glycosyltransferase family 92 280 497 IPR008166 -
Prci1g3816 976 MobiDBLite consensus disorder prediction 559 622 - -
Prci1g3816 976 ProSiteProfiles Zinc finger RING-type profile. 752 791 IPR001841 -
Prci1g3816 976 PANTHER UNCHARACTERIZED 31 547 - -
Prci1g3816 976 MobiDBLite consensus disorder prediction 695 716 - -
Prci1g3816 976 MobiDBLite consensus disorder prediction 650 738 - -
Prci1g3816 976 SUPERFAMILY RING/U-box 744 815 - -
Prci1g3816 976 MobiDBLite consensus disorder prediction 591 611 - -
Prci1g3816 976 MobiDBLite consensus disorder prediction 891 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3816 Prci-Chr1 54173006 54177993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3816 690 815 C3H Transcription Factor Family AT3G07200 26.984 4.29e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3816 - - pcin:129302497 1898.25