Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3743 ATGGACTGGGACTGGAAAGAGTCGGCGTGGGATCCATCTGGGCCGGAGCTATCAAATGGAGCGGCTTCAGTGGATTTGAGTCTTGGAGAGACTTCTGATATCGTACAAAAATCAGCCTCATATGCACCCAAGGACTTACCGAGAGACTCGAAATCGGCATCATCGCCATGTGGTTCGTCAAAAAGGAGCCGTACGTTGAATGGATCGACGCAGAGCGTGTCGTGCTTGGTGGATGGATGCGACTCCGACCTGAGTGATTGCAGAGAATATCATCGGCGACACAGAGTGTGTGAGAAGCACTCCAAGACGCCCATTGTGTTGGTAGGAGGAAAGCAGCAGCGATTCTGCCAGCAATGCAGCAGATTTCATTCTCTGGGAGAGTTTGACGAGGTTAAGAGGAGTTGCAGGAAACGTCTTGATGGACATAATAGGCGCAGAAGGAAGCCTCAGCCGCCTTCTCTTTTCATGGCTGCTGAGAAATTCCTGAGCGGCTACAAAGGACCCAGAATCCTTCATTTCGGTAGTCCTCAAACGTGCAACAACCCGTTTCTGACGAGCACATGGCCTGCCACTGCCAAAGCTGGAGCTGAACCAGTGATGATCAGTTATGACCAAAACAGTCTGCTAAGTTCCTTTGCTAATGTCCAGTATCAGCAGGATAAGCAACTTCCTCTATTTGGGTTAAGCAGCTCTAAAGCAGGCCATGGCGATGAGGCAGTGTCTGGGATTCCCATGAGCCAAACAACATTTGGTGCTGTTTCCCCATCAGCAAGTGCAAATGGTGGGCGGAAGCCTGCTTCTGATTGCAAACCTGGATCTTTTGATTCAAGTTGTGCTCTCTATCTTCTGTCAACACTTCAGACACAAAGTCAACAGTTAAGCTTGGTGCAGTCCACCGTAAATTGTCCAGTGCAATCATCTCCGTTAGAAGATTTGCATTTTGATGCTGGGGACAAGTACTCATCTTGCTCAGAAAGTCCACAAGGGAAGTCTACTAATCCCTTGTTGGTATTTGATGCGGACACAGCCAACCTTAATTGCAACCATATGATGCCCATGACGCCTGATGAAATTGTGGAAAATGGGGACTTGCCAACCTTACCATTTTTCTGGGAGTAG 1119 0.4861 MDWDWKESAWDPSGPELSNGAASVDLSLGETSDIVQKSASYAPKDLPRDSKSASSPCGSSKRSRTLNGSTQSVSCLVDGCDSDLSDCREYHRRHRVCEKHSKTPIVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFLSGYKGPRILHFGSPQTCNNPFLTSTWPATAKAGAEPVMISYDQNSLLSSFANVQYQQDKQLPLFGLSSSKAGHGDEAVSGIPMSQTTFGAVSPSASANGGRKPASDCKPGSFDSSCALYLLSTLQTQSQQLSLVQSTVNCPVQSSPLEDLHFDAGDKYSSCSESPQGKSTNPLLVFDADTANLNCNHMMPMTPDEIVENGDLPTLPFFWE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3743 372 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 308 IPR044817 GO:0003677
Prci1g3743 372 SUPERFAMILY SBT domain 73 154 IPR036893 GO:0003677|GO:0005634
Prci1g3743 372 MobiDBLite consensus disorder prediction 37 67 - -
Prci1g3743 372 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Prci1g3743 372 Gene3D - 66 136 IPR036893 GO:0003677|GO:0005634
Prci1g3743 372 MobiDBLite consensus disorder prediction 52 67 - -
Prci1g3743 372 MobiDBLite consensus disorder prediction 1 23 - -
Prci1g3743 372 Pfam SBP domain 75 148 IPR004333 GO:0003677
Prci1g3743 372 FunFam Squamosa promoter-binding-like protein 14 66 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3743 Prci-Chr1 53762302 53765227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3743 68 173 SBP-box Gene Family AT5G50670 66.038 1.46e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci1g3743 SBP 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3743 - - lja:Lj1g3v3847150.1 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3743 1 53762302 53765227 Prci1g3743 1 53762302 53765227 ECH