Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3683 ATGGAGGGAGACATGCCACCGATAGTAAACATCGTCCCTTGGATGGAAGGGAAGGTTGAAGACGAAGCCTCTTGGACCAGAACTAACAACGACGGTGAACTCAAGGACGACGACATTGTTTTGGGTGGCCCTCTAACCTCCTTCAAATCCATGCTCGAAGGTGACTGGTTCATGAACTCCGCTATCAATTTAGCTCACCAAGACCTCCTCAGCCTCCCGAATCCCCAAGAAAACACTGATATCGTCCTTTGTTCAAACCCAGCTCATAGTTTTTTAGTACAGCCAGTGGATTCGTCGTCTTCCTGTTCACCATCATTCACTCTTGACCCATCGCAGTCACAGCACTTTTTACAGCCGAAATCTTGTTTCCCTTCCATCCTCAATGTCATTTGCGACAACCCTTTTGACAATGGCTTCGATTTGAGCTCTGACGGTGGGTTCCTTGGTCCGTTCCGGGGAATTCATTCTTCGAATTCCCCTGTTTTGTCGGATTTCTCGGGCTTGGATACTCATTCCCAGATGGGCAGTCACGAACTGAGCTCAAACTCTGAGTTTCTAGCTACTCGGCTGCTGCCAGCAGCTGACAATGCCGTCTCGTTAGGTGGCGGATTTTGTCCGGCGGGTTTAGGAGGGTTTGATAATCCGGGAGGTGCTCTGTTGTTGAACCGGTCTAAGGTTTTGCGACCTCTTGAAGTTTCCCCTCCAGTGGGTGCGGCACCGACTCTCTTTCAGAAGCGAGCAGCGCTCCGCAATAGTTCACATGGAATTGATAGATTGGGAACTTTGGAGATTTCAGCGTCGAGATTTGAAAATTATTCAACAAGGTTGGAGAACATGGAGAGGAAGAGAAAGGGAGTCGTAGAAGAGGAAGCTGCCATCGACGCATCAGGGCTGAACTATGATTCTGATGAGCTTAATGAGAATGGTAAAATAGAGGTGGATGCTTATAATGTGGGGAGCAACTATAATGCCAATAGTTCTGTCAGTGGTGGAGACCAGAAGGGGAAGAAAAAAGGGCAACCAGCCAAAAATCTGATGGCTGAAAGGCGGCGAAGAAAGAAACTAAATGATAGGTTGTACATGCTGAGATCAGTTGTGCCGAAGATTAGCAAGATGGATAGGGCTTCGATACTCGGGGATGCGATTGACTACTTGAAGGAGCTGCTGCAGCGGATTAATAATCTTCACAACGAGCTGGAGTCAACTCCGCCTGGCTCATTGCCACCATCTTCTACAAGCTTTCACCCTTTGACACCCACTCCACCAACACTCCCCTGTCGGATCAAGGAAGAGCTTTGCCCTAGCTCCTTGCCAAGTCCCAAAAACCAAGCTGCAAGGGTGGAGGTTCGAGTGAGGGAAGGGAGAGCTGTCAACATCCATATGTTTTGTGCCCGCAGGCCAGGTCTTCTGCTTTCCACCATGAAGGCTTTGGACAACCTTGGTCTAGATGTGCAGCAGGCCGTTATAAGCTGTTTCAATGGCTTTGCTTTAGACGTGTTCAGAGCTGAGCATTGCAGAGAAGGGCTTGACGTGGTCCCTGAGCAAATCAAAGCAGTTCTGTTGGATTCAGCCGGTTTCCATGGTATGATATGA 1593 0.489 MEGDMPPIVNIVPWMEGKVEDEASWTRTNNDGELKDDDIVLGGPLTSFKSMLEGDWFMNSAINLAHQDLLSLPNPQENTDIVLCSNPAHSFLVQPVDSSSSCSPSFTLDPSQSQHFLQPKSCFPSILNVICDNPFDNGFDLSSDGGFLGPFRGIHSSNSPVLSDFSGLDTHSQMGSHELSSNSEFLATRLLPAADNAVSLGGGFCPAGLGGFDNPGGALLLNRSKVLRPLEVSPPVGAAPTLFQKRAALRNSSHGIDRLGTLEISASRFENYSTRLENMERKRKGVVEEEAAIDASGLNYDSDELNENGKIEVDAYNVGSNYNANSSVSGGDQKGKKKGQPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINNLHNELESTPPGSLPPSSTSFHPLTPTPPTLPCRIKEELCPSSLPSPKNQAARVEVRVREGRAVNIHMFCARRPGLLLSTMKALDNLGLDVQQAVISCFNGFALDVFRAEHCREGLDVVPEQIKAVLLDSAGFHGMI 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3683 530 CDD bHLH_AtAMS_like 342 413 - -
Prci1g3683 530 MobiDBLite consensus disorder prediction 324 347 - -
Prci1g3683 530 SMART finulus 345 394 IPR011598 GO:0046983
Prci1g3683 530 Pfam Helix-loop-helix DNA-binding domain 344 388 IPR011598 GO:0046983
Prci1g3683 530 Coils Coil 262 289 - -
Prci1g3683 530 Coils Coil 382 402 - -
Prci1g3683 530 CDD ACT_UUR-ACR-like 459 500 - -
Prci1g3683 530 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 388 IPR011598 GO:0046983
Prci1g3683 530 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 409 IPR036638 GO:0046983
Prci1g3683 530 Gene3D - 332 402 IPR036638 GO:0046983
Prci1g3683 530 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 224 526 - -
Prci1g3683 530 FunFam BHLH transcription factor 335 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3683 Prci-Chr1 53317431 53322506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3683 24 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 57.230 6.82e-149 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g3683 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3683 - - pcin:129305251 999.193