Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3652 ATGGTTCTTCAAAATGATATTGATCTGTTAAATCCCCCGACTGAGCTGGAGAAGAGAAAACACAAGCTCAAGCGTCTTGTCCAGTCTCCAAACTCTTTCTTCATGGATGTGAAGTGCCAGGGTTGCTTCAACATAACCACTGTTTTCAGCCACTCTCAGACTGTTGTGGTATGTGGCAACTGCCAAACTGTCTTATGCCAGCCCACTGGTGGACGGGCTAGGCTAACAGAGGGCTGCTCTTTTAGGAAGAAGGGAGACTAA 261 0.4713 MVLQNDIDLLNPPTELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3652 86 FunFam 40S ribosomal protein S27 1 86 - -
Prci1g3652 86 PANTHER 40S RIBOSOMAL PROTEIN S27 1 86 IPR000592 GO:0003735|GO:0005840|GO:0006412
Prci1g3652 86 Gene3D - 5 85 IPR023407 -
Prci1g3652 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Prci1g3652 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Prci1g3652 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Prci1g3652 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3652 Prci-Chr1 53191575 53192959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3652 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 4.55e-59 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3652 K02978 - minc:123230388 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3652 1 53191575 53192959 Prci1g3652 1 53191575 53192959 ECH