Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3650 ATGAACCCATCAACTTCGTCGTCGCCTTCCAAGGCCAAAAGGAAGCAAATGGCGACAACAAGCGCTAAGACACCAGAGCAACAACATGGAACGGGGTGGGGAGGAAGGTACCTGGGTGTCCGGAGAAGGCCGTGGGGAAGATACGCGGCAGAGATTAGAGACCCTTCGACCAAAGAAAGGCACTGGCTTGGCACCTTCGACACTGCTGAGGAAGCTGCCTTGGCCTACGACAGAGCAGCGCGCTCCATGCGCGGCTCTCGCGCTCGAACCAATTTCGTCTACTCAGATACTCCGCCTGGCTCTTCCGTAACCCCCATTGTCTCTCCTGATGAAGAAGCCCACCAGAACCACGACTTCTCTTCTCTTTTCGCTTCGAACTTGCTCTCTCAGCAGCCCAACCCGACTGATCGGCCGACGGAATGCGCTCTCTCGGGCGGGCTCTTGGGGATTGAGGACAGTGATGCCTGGGCAGTTTCTTCGGAGATTTATTCCCAGCAATATCAATCACCCCCGATGGACGTGCATAATGTGCCCCACTTCCGCCAGTTGTATGATGATAACAGCACCGAGCTCCCTCCATTGCCACCGGATATTACAACCTCCATAGGTTACGAAATGGGCCATGAGTTTTACGATAATGGCTTCGGATACTCAGAGCAAGGCACGGGAACGGGATTCGAACCATCAACCAGCTGGCCTTCGTGCTCATATATGGGCTTGGATTCGGGTGATTACATGCATAGCCCACTGTTGAGCACAGTGCCAACGGTGTCAGAAAAGATGCCGGAGGGTTTTGATTTGGGAAGTTCCTCGTATTTCTTCTGA 825 0.5394 MNPSTSSSPSKAKRKQMATTSAKTPEQQHGTGWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDTPPGSSVTPIVSPDEEAHQNHDFSSLFASNLLSQQPNPTDRPTECALSGGLLGIEDSDAWAVSSEIYSQQYQSPPMDVHNVPHFRQLYDDNSTELPPLPPDITTSIGYEMGHEFYDNGFGYSEQGTGTGFEPSTSWPSCSYMGLDSGDYMHSPLLSTVPTVSEKMPEGFDLGSSSYFF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3650 274 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 121 - -
Prci1g3650 274 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Prci1g3650 274 Pfam AP2 domain 37 85 IPR001471 GO:0003700|GO:0006355
Prci1g3650 274 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Prci1g3650 274 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Prci1g3650 274 MobiDBLite consensus disorder prediction 1 39 - -
Prci1g3650 274 MobiDBLite consensus disorder prediction 1 28 - -
Prci1g3650 274 FunFam Ethylene-responsive transcription factor 2 36 94 - -
Prci1g3650 274 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Prci1g3650 274 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Prci1g3650 274 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Prci1g3650 274 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3650 Prci-Chr1 53171786 53173144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3650 17 266 AP2-EREBP Transcription Factor Family AT5G13910 43.846 1.03e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci1g3650 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3650 K09286 - qsa:O6P43_009772 298.13