Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3628 ATGAACGATCTAATGACCAAATCATTCACCAGCTACGTGGATTTGAAGAAAGCCGCCATGAAAGATGTGGATCTGGAAGCTGGTCTTCCTCCCAATGACGTAGAACTGAGCTCTTCAACAACCAACATGGATACTGACATGGGTCTGTTCCTAGAAGAGGCAGAGAAGGTGAAAACGGAGATAGGTCATCTCCAAGAAATATTGAGCAGGTTCCAGCAGGCCAATGAAGAGAGCAAATCCCTTTGCAAGCCCGAGGCCCTAAAATCCTTAAGGAACAGAATCAATGCTGACATTGTCACCATGCTCAAGAAGGCTAGAACCATCCGGTCCCAGCTAGAAGAAATGGACCGAGCCAATGCTGCTAACAGGAGGCTATCTGGCCTCAAAGAAGGAACTCCAGCGATTTACAGGACCCGAATCGCCGTCACCAATGGACTCCGCAAGAAACTGAAGGAGATAATGATGGAGTTTCAGGGACTGAGGCAGAGAATGATGACGGAGTACAAAGACACAGTGGGAAGGCGATATTTCACAGTAACAGGGGAATACCCAAATGAGGAAGTCATAGAGAAGATAATCGCAAATGGAGGCGAGGAATTCTTGAGCAAGGCAATACAAGAGCACGGTAGGGGAAGGGTTCTGGAGACGGTGGTGGAGATACAGGACAGGCATGACGCAGCTAAAGAGATTGAGAAGAGCCTGCTAGAGCTGCACCAGGTGTTTCTGGATATGGCTGTGATGGTGGAGGCACAGGGCGAGAAGATGGATGATATTGAGCACCATGTGCTTCATGCTTCCCACTATGTCAAGGACGGGACTAAGCATCTGCAGACAGCAAAGAAATACCAAAAGAGTAGTAGAAAGTGGATGTGTATTGGATTGATACTTCTCCTGATTCTCATTCTCGTAATTGTCATCCCCGTCGCCACCAGTCTCAGCAGTTCTTGA 948 0.4789 MNDLMTKSFTSYVDLKKAAMKDVDLEAGLPPNDVELSSSTTNMDTDMGLFLEEAEKVKTEIGHLQEILSRFQQANEESKSLCKPEALKSLRNRINADIVTMLKKARTIRSQLEEMDRANAANRRLSGLKEGTPAIYRTRIAVTNGLRKKLKEIMMEFQGLRQRMMTEYKDTVGRRYFTVTGEYPNEEVIEKIIANGGEEFLSKAIQEHGRGRVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKHLQTAKKYQKSSRKWMCIGLILLLILILVIVIPVATSLSSS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3628 315 CDD SynN 47 204 IPR006011 GO:0016020
Prci1g3628 315 Pfam Syntaxin 50 252 IPR006011 GO:0016020
Prci1g3628 315 SMART tSNARE_6 212 279 IPR000727 -
Prci1g3628 315 Gene3D - 47 175 - -
Prci1g3628 315 SMART SynN_4 42 169 IPR006011 GO:0016020
Prci1g3628 315 Gene3D - 214 312 - -
Prci1g3628 315 FunFam Syntaxin 132 210 310 - -
Prci1g3628 315 Pfam SNARE domain 254 305 IPR000727 -
Prci1g3628 315 CDD SNARE_syntaxin1-like 216 278 - -
Prci1g3628 315 PANTHER SYNTAXIN 57 302 IPR045242 -
Prci1g3628 315 SUPERFAMILY t-snare proteins 45 272 IPR010989 GO:0016020|GO:0016192
Prci1g3628 315 ProSitePatterns Syntaxin / epimorphin family signature. 223 263 IPR006012 GO:0005484|GO:0006886|GO:0016020
Prci1g3628 315 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 44 175 - -
Prci1g3628 315 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 217 279 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3628 Prci-Chr1 53010856 53012310 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3628 1 315 SNARE and Associated Proteins AT1G08560 67.610 3.86e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3628 K08486 - qsa:O6P43_006135 529.25