Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3623 ATGGATGACAAAGGAGCTGAGGAGGCTCTGGATTTGCCTCCGGGTTTCAGATTCCATCCCACGGACGAGGAGATCATCACTTTTTATCTCACGGAGAAGGTTCTGAATAGAAACTTCAGTGCAACTGCCATCGGTGAAGCCGATTTCAACAAGTGCGAGCCTTGGGACCTCCCCAAGAGAGCGAGGATGGGGGAGAAAGAGTGGTACTTCTTCTGTCAAAGAGACAGGAAATATCCAACGGGGACGAGAACGAATAGAGCGACGGAGACTGGGTACTGGAAGGCCACCGGAAAAGATAAGGAGATTTACAGAGGGGAACGCAACCTCGTGGGGATGAAGAAGACCCTCGTCTTCTACAGAGGGAGAGCTCCTAAGGGGGAGAAAACTGGCTGGGTTATGCATGAATTCCGATTGGAAGGCAAATTCGCTACTTTCAACCTCCCCAAGGCCGCAAAGGATGAATGGGTGGTGTGCAAGATTTTCCACAAGAACGCGGACGTCAAAAAGACCCCTATTGTTCCTGAGCTTCTAAGGATGAGCTCTCTTGGCGATCATCTGCTGGATTTCTCTCCGTCTCTTCCGCCTCTCATGGATCCTTGCTTCAGTAACGCCGACCAGCCCGGCTACAGTGGGGGCGATGAATTCAAGGTGGCCAGCCAGCAGCCATCATCGGACGGCTATTATCTCCCCAACTTCGCCGGCAACAACCATCACAATCAGACGTTGATGAAGGTAGAAGAAGACTGCAGAAACAATGAGATGATCCCCACTCACTGCACCGCCAGTCCACACGAGCAACCTCAGATAGGAATAATCCCAAACACCGGTTTGTACCTTCAGCAGAATGTTTTGTCAGATTATAGGAACAGAGATGCCGGAGGCGTGAAGAACGAAAACGTGTCGTGGAGAATGGATAAACAGTGCAATATGGAACATTCGATGGTGAGTGTGTCGCAGGACACAGGCGTAAGCAATGACAGAAACGCCGAAACTTCCCCGGCGGTTTCCGTTGCGGGAAGGAATAAGGCAGTTTACGAGGATGATTTCATCCAGGCTCCATCACTGATCGATCCCCTTTCAGATCTGGACTGCCTCTGGGATGACTACTGA 1110 0.5099 MDDKGAEEALDLPPGFRFHPTDEEIITFYLTEKVLNRNFSATAIGEADFNKCEPWDLPKRARMGEKEWYFFCQRDRKYPTGTRTNRATETGYWKATGKDKEIYRGERNLVGMKKTLVFYRGRAPKGEKTGWVMHEFRLEGKFATFNLPKAAKDEWVVCKIFHKNADVKKTPIVPELLRMSSLGDHLLDFSPSLPPLMDPCFSNADQPGYSGGDEFKVASQQPSSDGYYLPNFAGNNHHNQTLMKVEEDCRNNEMIPTHCTASPHEQPQIGIIPNTGLYLQQNVLSDYRNRDAGGVKNENVSWRMDKQCNMEHSMVSVSQDTGVSNDRNAETSPAVSVAGRNKAVYEDDFIQAPSLIDPLSDLDCLWDDY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3623 369 Gene3D NAC domain 21 168 IPR036093 GO:0003677|GO:0006355
Prci1g3623 369 Pfam No apical meristem (NAM) protein 13 138 IPR003441 GO:0003677|GO:0006355
Prci1g3623 369 FunFam NAC domain-containing protein 100-like 21 167 - -
Prci1g3623 369 ProSiteProfiles NAC domain profile. 12 163 IPR003441 GO:0003677|GO:0006355
Prci1g3623 369 SUPERFAMILY NAC domain 9 164 IPR036093 GO:0003677|GO:0006355
Prci1g3623 369 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3623 Prci-Chr1 52942568 52944663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3623 1 336 NAC Transcription Factor Family AT3G04060 52.663 1.97e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci1g3623 NAM 6.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3623 - - pcin:129284658 780.4