Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3620 ATGTACTATCGTCAGCAACAGCAAGCAAAGAACATTCACTCTTTAAGGATGCCCAACCCTCCTGAAAGGCATATGATCGTCCATGGGGGAAGTGCAACTGGAGACTCAGGGCTTGTCCTCTCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTCCATGAACGTTTTGTAGAAGCAGTCAACCAGCTAGGAGGGCCAGATAAAGCTACCCCAAAAACAGTATTGAAACTTATGGCGATTCCTGGACTTAATCTATACCACCTAAAGAGTCATCTACAGAAATACAGACTCAGTAAAAATCTGCATGGACAGGCCAACAATGGCACCTATAGAAACGAAGCACCAGGGCAAATGTCCGAAACAGGTGGAGTTCATATGAAAAATTTAACCGTCGGACTTCAGACTAACAAGGACTTAGAAATAAATGAGGCACTACAGATGCAAATTGAAGTGCAAAGAAGGCTGCATGAGCAGCTCGAGGTACAGAGACACTTGCAGCTTCGTATAGAGGCTCAGGGGAAGTATCTCCAAGGAGTGCTGGAGAAAGCCCAAGAGACACTAGAGAGACAGAATCTGGGCACAGCAGGACTTGAAGATGCCAAGGTTCAACTCTCTGAACTGGCATCTAAAGTATCAACTCAATACATAGAGCCTGCATTTTCAGAGCTGAAAGAATTACAGGCATTATGGCCTCAGCAAGAGCAAGTGAATAAAATCACCAATTGTCCAATTGATAGCTGCTTGACATCTAGTGAAGGATCTCAGAGAGACCAAGACGCAAATTACGTGGGTTTAAATTTGAGATTATGTGATGGAACTCCATTTTTAAGCTCAAAAGAGGGTGCTCCAGAGCCTATTCTTCTGAAGTCTGATCTCACATTAAGTGACCGGCTTCAGGAGAAATTGTTTTTTCTTTCCCCATCAAGCAATGATGCAGATAGAAGAAACTCAAAACTCACATCCATGGATGTTGGACTTAAAAGAGAAGAAAGCTTGGGGAAACCGCCTGTTTTGAAGGAAGATTTGAAGTTAGAGGAAGAAAGGTGGCTGAGGAAGGAAAGAGCTGAAAATGAGGCTGTTCCAGGTAAAATGAAATATGGGAAAAATTCTCACGATTATAGACAGTCTAACTTCGAGACCACACTGGACCTAAATATTCATGATGAAAATGATGCTTCTTCCAACTGCCAACAGTTTGACTTGAATGGATTTAGCTGGAATTGCTAG 1233 0.4274 MYYRQQQQAKNIHSLRMPNPPERHMIVHGGSATGDSGLVLSTDAKPRLKWTPDLHERFVEAVNQLGGPDKATPKTVLKLMAIPGLNLYHLKSHLQKYRLSKNLHGQANNGTYRNEAPGQMSETGGVHMKNLTVGLQTNKDLEINEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQGVLEKAQETLERQNLGTAGLEDAKVQLSELASKVSTQYIEPAFSELKELQALWPQQEQVNKITNCPIDSCLTSSEGSQRDQDANYVGLNLRLCDGTPFLSSKEGAPEPILLKSDLTLSDRLQEKLFFLSPSSNDADRRNSKLTSMDVGLKREESLGKPPVLKEDLKLEEERWLRKERAENEAVPGKMKYGKNSHDYRQSNFETTLDLNIHDENDASSNCQQFDLNGFSWNC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3620 410 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Prci1g3620 410 MobiDBLite consensus disorder prediction 1 20 - -
Prci1g3620 410 Gene3D - 44 102 - -
Prci1g3620 410 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Prci1g3620 410 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 23 309 IPR044848 GO:0003700
Prci1g3620 410 FunFam Myb family transcription factor 44 102 - -
Prci1g3620 410 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Prci1g3620 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Prci1g3620 410 Coils Coil 144 164 - -
Prci1g3620 410 Pfam MYB-CC type transfactor, LHEQLE motif 142 188 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3620 Prci-Chr1 52923552 52926682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3620 77 409 G2-like Transcription Factor Family AT3G04030 48.116 7.28e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci1g3620 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3620 - - gmx:100789797 503.827