Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3619 ATGGAGCAATGGTGCAACACGTGCTCAAACATGGTGAACCCAATGAGGGAAGGAGAGAACAAATGCCCAGTATGTGGGTCAGAATTCACAGAGGCAACAATGGATCAGAGCCTGAGATTATACCACAACGAAGGAAGCGATCTGATCAGATCAGCCTCTGTGTTCTCTCTTTACGCGCCAATATTACTGGGTTTGATGAGTGCTCTCAGACCTGCTCTAGCAACCATCAGCAGCAACAGCAGCAGCAGCAGCAACAACAACGGTTCAAGTTCAAGGGAGGAGGAAGACAACGAGCAAGAGATGGAACAGCACGGTGACCTCGTGGTGAGAAGAAGGAGAAGAACATCGTCCGCTTCTCTCATGCTTGTCTTTCGTCGTCTCCATGATAGGATGTCGCTGCCAGAATCTGATCAGAATACGAACACAGAAAACGATCATGGAAGCAATGATGGCGGTGGTGATAACAACGTGAATCTCAACGTGGTTGTCATTGATCCGTTCAACGAAGAGGCCTTGATCCTGCGAGGTTCTTCTCGGATGAACAGCGCCAGAAGTACAACTCCATTAATCGAGAACCCCATGGGGTCACTGGGTGACTTTCTGGAGGGACCTGGGTTCGGATTATTACTGCAACACTTGACACAGAATAACGAGCCTAATAGATACGTGAGTAATGTGAACCCGCCGGCGCAGAAGGCGGCAATAGAAGCAATGCCGACGGTGATCACGGAGGAGAATATGCAGTGCATAATATGCTTGGAGGACGCAGAGACTGGGAGTGAAGTGAAGGAGATGCCGTGCGGGCATAGGTTTCACAGTGACTGCATTTTCTCCTGGTTGAAGCTTCGGAGTTCTTGCCCGGTCTGTAGGTTTCAGATGCCGTCCGATGATTCTAAAGTTGAATCCAATGGTGGACGTCGGAATGAAGGCGATCCGAGTAATGATCAGGTCATGGATAGAGAACAGAGAATGAGTTTTGGAAGAAGGAATTGGCTTTCCATATCGCAGCCATTTGATTACTTTCTTCCTTCCCCTTGA 1038 0.4884 MEQWCNTCSNMVNPMREGENKCPVCGSEFTEATMDQSLRLYHNEGSDLIRSASVFSLYAPILLGLMSALRPALATISSNSSSSSNNNGSSSREEEDNEQEMEQHGDLVVRRRRRTSSASLMLVFRRLHDRMSLPESDQNTNTENDHGSNDGGGDNNVNLNVVVIDPFNEEALILRGSSRMNSARSTTPLIENPMGSLGDFLEGPGFGLLLQHLTQNNEPNRYVSNVNPPAQKAAIEAMPTVITEENMQCIICLEDAETGSEVKEMPCGHRFHSDCIFSWLKLRSSCPVCRFQMPSDDSKVESNGGRRNEGDPSNDQVMDREQRMSFGRRNWLSISQPFDYFLPSP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3619 345 MobiDBLite consensus disorder prediction 300 322 - -
Prci1g3619 345 MobiDBLite consensus disorder prediction 91 111 - -
Prci1g3619 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 296 IPR013083 -
Prci1g3619 345 FunFam E3 ubiquitin-protein ligase RNF181 218 296 - -
Prci1g3619 345 MobiDBLite consensus disorder prediction 134 156 - -
Prci1g3619 345 MobiDBLite consensus disorder prediction 131 156 - -
Prci1g3619 345 SMART ring_2 249 289 IPR001841 -
Prci1g3619 345 MobiDBLite consensus disorder prediction 76 111 - -
Prci1g3619 345 MobiDBLite consensus disorder prediction 296 322 - -
Prci1g3619 345 Pfam Ring finger domain 248 290 IPR001841 -
Prci1g3619 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 92 294 - -
Prci1g3619 345 SUPERFAMILY RING/U-box 238 296 - -
Prci1g3619 345 ProSiteProfiles Zinc finger RING-type profile. 249 290 IPR001841 -
Prci1g3619 345 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3619 Prci-Chr1 52918755 52920175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3619 161 311 C3H Transcription Factor Family AT1G26800 36.842 1.69e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3619 - K11982 pcin:129291269 634.795