Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3611 ATGGACGTGTGCCGGAATGTATCAGTTTCCGGTGAGTGCAAGCAAGAGCAGGTTCTTTCCCCTTGTTCGAAGCTTTCTACCTTCTCAACCAGCCTCGATGACCTCTTCTCTGCTCAGAACACGGAGGTGGATGTCGGATTGGAGTGGCTGTCAGTATTTGTGGAGGACTGCTTTTCCAGCCAAGCAAGCTGCCTCTTGGCACCTCCTTATGTTCATCAACCCACAACCACAGCCTCCAAAGCTTCAAAACCATTGCAGAGACCCCACCAGAATCAGTCTTCTCTGCAGAATTTTGCGGTGCCCGGAAAAGCCAGAAGCAAAAGGAAGAGGCTCTCAGCCCCGAGAGCCAAAGACCCTTTAAGCATCTGGTCACACCATTTAAACCCACAAAACGAAGCCATAAGCTCAGACCCTCCTCTTCTCAAACAGGCATACTGGCTAGCAGACAGTGAACTCATCTTCCCCAACAAGAAAGAAAAGGAAGAAGAAAGCAAAGAGGGGGAAGCAGAAGCAGGAGAAGAAGAGGAGGCTGAGAAGGGGATGGCGAGGAAGGAATTGGAGAGTGAGGTCAGCAATGGGCAAAATCCAATGCCAAGGAGGTGCAGTCACTGCTTGGCACAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTACAGGCCAGCCAAGAGTCCAACTTTTGTGAGCTACCTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGTCTCTTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCCCGGGGAGCACCAGTGA 852 0.507 MDVCRNVSVSGECKQEQVLSPCSKLSTFSTSLDDLFSAQNTEVDVGLEWLSVFVEDCFSSQASCLLAPPYVHQPTTTASKASKPLQRPHQNQSSLQNFAVPGKARSKRKRLSAPRAKDPLSIWSHHLNPQNEAISSDPPLLKQAYWLADSELIFPNKKEKEEESKEGEAEAGEEEEAEKGMARKELESEVSNGQNPMPRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSLVSSSSSSSSSSFPGEHQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3611 283 SMART GATA_3 195 249 IPR000679 GO:0006355|GO:0043565
Prci1g3611 283 MobiDBLite consensus disorder prediction 75 117 - -
Prci1g3611 283 MobiDBLite consensus disorder prediction 75 100 - -
Prci1g3611 283 FunFam GATA transcription factor 191 276 - -
Prci1g3611 283 Pfam GATA zinc finger 201 235 IPR000679 GO:0006355|GO:0043565
Prci1g3611 283 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 259 - -
Prci1g3611 283 Gene3D - 190 263 IPR013088 GO:0006355|GO:0008270
Prci1g3611 283 ProSiteProfiles GATA-type zinc finger domain profile. 199 231 IPR000679 GO:0006355|GO:0043565
Prci1g3611 283 CDD ZnF_GATA 200 247 IPR000679 GO:0006355|GO:0043565
Prci1g3611 283 ProSitePatterns GATA-type zinc finger domain. 201 226 IPR000679 GO:0006355|GO:0043565
Prci1g3611 283 PANTHER GATA TRANSCRIPTION FACTOR 26 272 - -
Prci1g3611 283 Coils Coil 157 177 - -
Prci1g3611 283 MobiDBLite consensus disorder prediction 157 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3611 Prci-Chr1 52891697 52893386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3611 20 263 C2C2-Gata Transcription Factor Family AT4G32890 39.044 2.05e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci1g3611 GATA 7.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3611 - - pcin:129284700 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3611 1 52891697 52893386 Prci3g2292 3 36602936 36604391 CCT
Prci1g3611 1 52891697 52893386 Prci1g3611 1 52891697 52893386 ECH