Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3606 ATGGCAATTTCACGAACAGGAGTGTACGTTGACGACTATTTGGAGTATGCAAGCACATTGCCTGCTGAACTCCAGAGATTGTTAAACACTATTAGGGAACTCGATGAAAGATCCCAATCTATGATAAACCAGACCAGGCAACGCACTAGGTACTGTTTAGGGTTGTCTTCATATGGCTCTAAGAAGGTTAATCATAATAGTAGCCATATCTATAATAACATTAACACCAACGAAGAAGACGATGCAACAATTGAGAAAATGCATAAAGAGATTGAGGCTAATCAGGATAGTGCTCTAAGTCTGTGCACCGAAAAGGTTTTGTTGGCGCGGCAAGCATATGACCTGATAGATAGCCATATAAAACGACTTGATGAGGATTTGAACAACTTTTCTGAAGATCTAAAGCAAGAAGGGAAAATACCACCAGATGAACCAGCTATTCTCTCCCCCTTGGCTATAGTCCCAAAAAGTGAAAAACGCAAATCCTTATGTGGAGCACCTCTATCAAAGAGACTTGATTACAGGGATAGAGATTGGGATTGGGAGCGTGATAGAGATTTTGAACTTATGCCCCCACCAGGAAGCCATAAGAAGGAGTATGCAACTCCCATGGATATTGATCAACCGATTGATCCGAATGAACCTACATACTGTATCTGTCATCAGGTTTCTTATGGAGATATGATCGCTTGTGACAATGAAAATTGCCAAGGAGGTGAATGGTTCCATTACTCGTGTGTTGGCCTGACTCCCGAAACAAGATTCAAGGGAAAGTGGTATTGTCCTACTTGCAGACCACACTTTCAATGA 810 0.416 MAISRTGVYVDDYLEYASTLPAELQRLLNTIRELDERSQSMINQTRQRTRYCLGLSSYGSKKVNHNSSHIYNNINTNEEDDATIEKMHKEIEANQDSALSLCTEKVLLARQAYDLIDSHIKRLDEDLNNFSEDLKQEGKIPPDEPAILSPLAIVPKSEKRKSLCGAPLSKRLDYRDRDWDWERDRDFELMPPPGSHKKEYATPMDIDQPIDPNEPTYCICHQVSYGDMIACDNENCQGGEWFHYSCVGLTPETRFKGKWYCPTCRPHFQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3606 269 ProSiteProfiles Zinc finger PHD-type profile. 215 267 IPR019787 -
Prci1g3606 269 SMART PHD_3 217 265 IPR001965 -
Prci1g3606 269 Pfam PHD-finger 217 266 IPR019787 -
Prci1g3606 269 SMART ING_2 9 130 IPR024610 -
Prci1g3606 269 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 130 IPR024610 -
Prci1g3606 269 Coils Coil 24 44 - -
Prci1g3606 269 SUPERFAMILY FYVE/PHD zinc finger 192 266 IPR011011 -
Prci1g3606 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 267 IPR013083 -
Prci1g3606 269 CDD ING_plant 17 127 - -
Prci1g3606 269 FunFam PHD finger protein ING 209 267 - -
Prci1g3606 269 PANTHER INHIBITOR OF GROWTH PROTEIN 2 265 IPR028651 -
Prci1g3606 269 Gene3D - 5 128 - -
Prci1g3606 269 CDD PHD_ING 217 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3606 Prci-Chr1 52862626 52866607 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci1g3606 ING 9.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3606 - - lang:109339676 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3606 1 52862626 52866607 Prci1g3606 1 52862626 52866607 ECH