Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3600 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGATCGAAACGGCTTGGTGATCTTCAACCTGCCCCACTGCCTGTTGATCAAGGAGAGAATTGTGCACAACCTGCTTCAACTAGAGCCAGGAGGAGAGTTGGAGGAGGAAGAGGACGTGGTAATGCCACAGCTGTAGCAAAAGGGCCTTCACCAGTGGTACCCACAAGGCGAACTGCGGCTGGTCGAGGCCGGGGAGTAAGATTAATTAATCTTGACCCTGAACCTTGTGAGGTCCTTCCGGATCCAGCTGCATTAGGAGCCCCAGAACCCCCACGTGTTGAGGCGGTGGCCAACAATAAAATTGTGATGGAAGGTGGAAGTGCAGACAAGGTGGTTGGAGCTGAAGAGGAACCTACCACAACCCCTATTCCTGAGAGGGTTCAAGTTGGTAGTTCTCCTGTGTATAAGATTGAAAGGAAATTGGGTAAGGGTGGTTTCGGTCAAGTGTATGTTGGAAGAAGGGTAAGTGGTGGGTCTGACCGGACAGGTCCTGATGCAATTGAGGTTGCACTGAAGTTTGAACACAGAAATAGTAAAGGTTGCAATTATGGGCCTCCTTATGAGTGGCAGGTCTACAATACCTTGAATGGGTGTTATGGCATTCCTTGGGTTCATTACAAGGGCCGACAAGGAGATTTCTATATTCTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCACTTGGCCAATCGATGTCGCCAAACATGGTTGCTTGCATTGCAGTGGAAGCAATATCAATTCTTGAGAAGCTCCACATGAAAGGGTTCGTGCATGGAGATGTAAAACCAGAAAACTTCTTACTTGGTCAACCTGGCACAGCTGATGAGAAGAAACTATATCTTATTGATCTTGGGTTGGCTTCAAGATGGAAGGATGCATCATCTGGTCAGCATGTTGAATATGACCAAAGACCTGATATTTTCAGGGGAACAATAAGGTATGCCAGTGTTCATGCACATTTAGGTAGGACAGGAAGTCGAAGGGATGATCTTGAGTCACTGGCCTACACTCTAATCTTTCTCATAAAAGGGAGGTTACCGTGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAGAAGATGTCTACTTCTCCAGAGTTAATGTGCTGCTTTTGTCCCGCCCCATTCAAACAGTTCCTTGAAGCTGTGACTAACATGAGATTTGATGAGGAGCCAAATTATTCCAAGCTTATATCTTTTTTTGAAAGCTTGATTGAACCCTGTATACCATTGAGACCAATCAGAATTGATGGAGCCTTAAAGGTTGGACAAAAGCGTGGGAGGATGCTTATTAACCTGGAAGAAGATGAGCAGCCAAAGAAGAAAGCACGCATAGGGAGTCCTGCTACACAGTGGATTTCAGTTTATAATGCACGCCGTCCCATGAAGCAGAGGTATCATTACAATGTAGCAGACACAAGGCTTCGTCAGCATGTAGACAAGGGTAATGAGGATGGGTTGTATATCAGCTCTGTTGCATCCTCATCAAATCTATGGGCCTTAATCATGGATGCAGGAACAGGTTTTTCTTCCCAGGTTTATGAATTGTCACCAGTCTTCCTGCATAAGGACTGGATTATGGAACAGTGGGAGAAAAATTATTATATCAGTTCAATAGCTGGTGCAACTAACGGGAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTACACACAGCAATCCTACAAAGTGAGTGAATCATTTCCTTTCAAGTGGATTAATAAGAAGTGGAAAGAAGGATTCCATGTTACCTCCATGACTACTGCTGGCAGTCGCTGGGGTGTCGTAATGTCCAGGAATGCTGGGTATTCTGATCAGGTTGTGGAGCTTGACTTTTTATATCCAAGTGAAGGAATACATCGCCGATGGGAAAGTGGTTACCGGATAACATCTATGGCTGCTACTGCTGATCAGGCAGCCTTCATACTCAGCATACCAAAACGCAAATTGCTTGATGAAACTCAAGAGACCCTACGTACCTCTGCCTTCCCTAGCACCCATGTAAAGGAAAAATGGTCCAAGAATCTTTATATTGCATCAATTTGTTACGGGCGGACTGTGTGCTAG 2118 0.4528 MPELRSGARRSKRLGDLQPAPLPVDQGENCAQPASTRARRRVGGGRGRGNATAVAKGPSPVVPTRRTAAGRGRGVRLINLDPEPCEVLPDPAALGAPEPPRVEAVANNKIVMEGGSADKVVGAEEEPTTTPIPERVQVGSSPVYKIERKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYNTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPNMVACIAVEAISILEKLHMKGFVHGDVKPENFLLGQPGTADEKKLYLIDLGLASRWKDASSGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMSTSPELMCCFCPAPFKQFLEAVTNMRFDEEPNYSKLISFFESLIEPCIPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKARIGSPATQWISVYNARRPMKQRYHYNVADTRLRQHVDKGNEDGLYISSVASSSNLWALIMDAGTGFSSQVYELSPVFLHKDWIMEQWEKNYYISSIAGATNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWESGYRITSMAATADQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3600 705 CDD STKc_CK1 144 418 - -
Prci1g3600 705 SUPERFAMILY Protein kinase-like (PK-like) 144 428 IPR011009 -
Prci1g3600 705 FunFam Casein kinase 1-like protein 116 464 - -
Prci1g3600 705 ProSitePatterns Protein kinases ATP-binding region signature. 150 181 IPR017441 GO:0005524
Prci1g3600 705 Pfam Protein kinase domain 144 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g3600 705 PANTHER CASEIN KINASE-RELATED 144 669 - -
Prci1g3600 705 Gene3D Transferase(Phosphotransferase) domain 1 115 461 - -
Prci1g3600 705 SMART serkin_6 144 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g3600 705 ProSiteProfiles Protein kinase domain profile. 144 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1g3600 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Prci1g3600 705 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3600 Prci-Chr1 52825602 52833636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3600 261 418 MAP Kinase Kinase Kinase AT5G50180 23.750 3.77e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Prci1g3600 Pkinase 5.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3600 - - gmx:100801967 1335.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3600 1 52825602 52833636 Prci1g3600 1 52825602 52833636 ECH