Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3590 ATGAGGAGTCCAAGGGTAAAAGGCCAGATCACGCCATGTTGTAGCAAGGTAGGGATAAAGAGAGGACCGTGGACGCCGGAGGAAGACGAGGTTTTGGCCAATTTTGTGAAGAAAGAAGGTGAAGGACGGTGGCGCACCCTTCCCAAGCGGGCGGGGCTGCAACGCTGCGGCAAGAGCTGCCGTCTCCGATGGATGAACTATCTCCGTCCCTCCGTCAAGAGAGGCCATATTGCTCCTGATGAGGAAGATCTCATCCTGCGCCTTCACCGCTTGCTGGGCAACAGGTGGTCTCTGATCGCTGGGAGGATACCTGGAAGGACGGACAACGAGATTAAGAACTACTGGAATACCCATCTCAGCAAGAAGCTCATAAGTCAGGGAATAGACCCCAGGACTCACAAGCCCTTACTCACTCTCGAAAATCATTCAAAATCTCAAGATGTCTATCATGAATCGAACACAAGTACATCAAATCCTCAACCAGTCGCAGAAATCGCTTCCACTACTTGTGCTCGAGAGATTGGTAGCTGCAGCCAGCAAAATCAGACAAATGATGCTATTCAAAATAACAGTCCTGACACTGTTGGGAATAACTGGGGGAGAAGTAGCAGCAGAGTGGTGACGTTCGAAAATGGGATCGAGGTTGAAAGAGATCGGCATGGGAAGATGATTGGGGAGGAAGAAACACTATCTTCGTTTCTGGATTCTTTGATCAATGATAACGAAGCACTTGATAACCAACAGACGGAGGCCGCCGGCCGCCACGTGTTTGCGGCTCCACCGGCACATCTGGTAGCTTCTTCTTCCCACCAACAATTTTTCGACCTTTCCTTTTGGGAAGCTGAATTCCAGAGTTTCGGAGGAGATCATCAACAGTAA 879 0.4994 MRSPRVKGQITPCCSKVGIKRGPWTPEEDEVLANFVKKEGEGRWRTLPKRAGLQRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLLTLENHSKSQDVYHESNTSTSNPQPVAEIASTTCAREIGSCSQQNQTNDAIQNNSPDTVGNNWGRSSSRVVTFENGIEVERDRHGKMIGEEETLSSFLDSLINDNEALDNQQTEAAGRHVFAAPPAHLVASSSHQQFFDLSFWEAEFQSFGGDHQQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3590 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Prci1g3590 292 SMART sant 73 121 IPR001005 -
Prci1g3590 292 SMART sant 20 70 IPR001005 -
Prci1g3590 292 Pfam Myb-like DNA-binding domain 79 119 IPR001005 -
Prci1g3590 292 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Prci1g3590 292 CDD SANT 79 119 IPR001005 -
Prci1g3590 292 MobiDBLite consensus disorder prediction 181 202 - -
Prci1g3590 292 CDD SANT 23 68 IPR001005 -
Prci1g3590 292 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Prci1g3590 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Prci1g3590 292 FunFam Myb transcription factor 18 74 - -
Prci1g3590 292 Gene3D - 78 154 - -
Prci1g3590 292 FunFam transcription repressor MYB5-like 78 146 - -
Prci1g3590 292 Gene3D - 21 73 - -
Prci1g3590 292 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 194 - -
Prci1g3590 292 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Prci1g3590 292 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3590 Prci-Chr1 52736139 52737818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3590 6 240 MYB Transcription Factor Family AT3G13540 57.021 3.42e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g3590 Myb_DNA-binding 5.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3590 K09422 - qsu:112003883 300.056