Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3575 ATGGACAGACTCATAAGATTAGATCCATCAAACATCGTTCCCGTCAGGGTCGAAGCGGGGCAGAAATGCGTTGGCCATATCACGTTACGCAACGTGATGTACACCATGCCAGTGGCCTTCAGGCTTCAGCCACTGATCAAGACTCGTTACACAGTGAAGCCTCAGTCTGGAATTATATCTCCTTTGGCCACACTCACGGTGGAGATCATCTATCACCTCCCACCAGGAGCTAGTCTCCCTCACTCGTATCCTCATTCCGATGATTCTTTCCTTCTGCACAGTGTGGTTGTTCCTGGTGCGGCAATTAAAGAGCCATCCTCTATGTTTGATTCTGTTCCGAGCGACTGGTTCACCACTAAGAAGAAGCAGGTCTTCATAGACAGTGGCATCAAGATCATGTTTGTGGGTTCGCCGATCTTAGCTCAACTCGTTGCAGATGGTTCCATGGATGACATCAGAGAGGCGCTGGAACGAAGTAACCCGTCATGGAAGGCTGAGAACTCAATGGACTCGCAAGGTCAGACGTTGCTTCACTTGGCCATTTCACGGAGCAGACCGGACCTTGTTCAATTACTCCTCGAATTCAAGCCCGATATCGAAGCTCCAAATCGTGCTGGTTCAACCCCACTTGAGGCTGCATCTTCCTCCGGAGAATCCTTAATTGTTGAGCTTCTATTAGCCCACAAGGCCAACACAGAACGATCAGAATCATCCGTTTGGGGGCCACTTCATCACGCAGCTAAAGGAGGACACTTGGAGGTCCTAAGGCTTCTTTTACTGAAAGGGGCTAAAGTAGATTCTCAAGCAAAAGATGGTAGCACGGCCTTGCACCTCGCAGTTGAAGAACGAAGACGAGATTGCGCTAGACTTCTGTTGGCTAACGGTGCCAGAACCGACGTTCGCAACACCAGAGAAGGCGACACGCCTTTGCACATAGCCGCATTCACGGGCGACGAGAACATGGTGAAGCTATTGCTGCAAAAGGGTGCGAATAAGGATGTGAGAAATGGGTTGGGGAAAACCGCATACGACGTCGCCGCCGAGAATGGATATAACCGCCTCTTCGACGCGCTTAAATTGGGAGACGAACTCTGCGTGGCGGCTAGAAAAGGGGAGGTGAGGACTATACAGAGGCTGATCGAGAACGGAGCGTCCATTAATGGAAGGGACCAGCACGGCTGGACCGCGCTTCACAGAGCCGCCTTCAAAGGGGGAACTGATGCGGTTCGGGCTCTGCTAGAGAAAGGGGTGGATGTGGATGCTAAAGACGAGGATGGGTACACGGCGTTGCATTGCGCCGCGGAGTCGGGTCATGCCGATGTGACGGAGCTGCTGGTGAAGAAGGGAGGAGATGTGGAAGCGAGGACCAATAAGGGCGTGACCGCGTTGCAAATAGCAGAGTCGCTGCACTATGTGGGGATCACGAGGATACTCGTCAGCGGCGGGGCTAGTAGGGAGAACAACTGTCAGATTCCAGCACCGCCGGCGAATATTCCGTTTGGGAAACAAATGGACGGTGGGGAGAAGAAGAAGATCATCAGAAACAGAGGGCTTCGGGGTAGCTTCGATCGCTCGGCGGCTCTAGCTGTGATGTAG 1596 0.5263 MDRLIRLDPSNIVPVRVEAGQKCVGHITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATLTVEIIYHLPPGASLPHSYPHSDDSFLLHSVVVPGAAIKEPSSMFDSVPSDWFTTKKKQVFIDSGIKIMFVGSPILAQLVADGSMDDIREALERSNPSWKAENSMDSQGQTLLHLAISRSRPDLVQLLLEFKPDIEAPNRAGSTPLEAASSSGESLIVELLLAHKANTERSESSVWGPLHHAAKGGHLEVLRLLLLKGAKVDSQAKDGSTALHLAVEERRRDCARLLLANGARTDVRNTREGDTPLHIAAFTGDENMVKLLLQKGANKDVRNGLGKTAYDVAAENGYNRLFDALKLGDELCVAARKGEVRTIQRLIENGASINGRDQHGWTALHRAAFKGGTDAVRALLEKGVDVDAKDEDGYTALHCAAESGHADVTELLVKKGGDVEARTNKGVTALQIAESLHYVGITRILVSGGASRENNCQIPAPPANIPFGKQMDGGEKKKIIRNRGLRGSFDRSAALAVM 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3575 531 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Prci1g3575 531 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Prci1g3575 531 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 140 354 - -
Prci1g3575 531 SMART ANK_2a 205 234 IPR002110 GO:0005515
Prci1g3575 531 SMART ANK_2a 458 487 IPR002110 GO:0005515
Prci1g3575 531 SMART ANK_2a 238 267 IPR002110 GO:0005515
Prci1g3575 531 SMART ANK_2a 172 201 IPR002110 GO:0005515
Prci1g3575 531 SMART ANK_2a 271 300 IPR002110 GO:0005515
Prci1g3575 531 SMART ANK_2a 305 334 IPR002110 GO:0005515
Prci1g3575 531 SMART ANK_2a 425 454 IPR002110 GO:0005515
Prci1g3575 531 SMART ANK_2a 392 421 IPR002110 GO:0005515
Prci1g3575 531 SMART ANK_2a 359 388 IPR002110 GO:0005515
Prci1g3575 531 Pfam Ankyrin repeats (many copies) 412 466 IPR002110 GO:0005515
Prci1g3575 531 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Prci1g3575 531 PRINTS Ankyrin repeat signature 408 422 IPR002110 GO:0005515
Prci1g3575 531 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Prci1g3575 531 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Prci1g3575 531 SUPERFAMILY Ankyrin repeat 167 486 IPR036770 -
Prci1g3575 531 Gene3D - 310 358 IPR036770 -
Prci1g3575 531 Gene3D - 430 480 IPR036770 -
Prci1g3575 531 Gene3D - 137 309 IPR036770 -
Prci1g3575 531 ProSiteProfiles Ankyrin repeat region circular profile. 242 266 - -
Prci1g3575 531 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Prci1g3575 531 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Prci1g3575 531 Gene3D - 359 429 IPR036770 -
Prci1g3575 531 Gene3D Immunoglobulins 1 125 IPR013783 -
Prci1g3575 531 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Prci1g3575 531 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Prci1g3575 531 Pfam Ankyrin repeats (many copies) 364 404 IPR002110 GO:0005515
Prci1g3575 531 ProSiteProfiles Ankyrin repeat region circular profile. 205 231 - -
Prci1g3575 531 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Prci1g3575 531 Pfam Ankyrin repeats (3 copies) 243 336 IPR002110 GO:0005515
Prci1g3575 531 Pfam Ankyrin repeats (3 copies) 166 232 IPR002110 GO:0005515
Prci1g3575 531 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Prci1g3575 531 ProSiteProfiles Ankyrin repeat profile. 364 391 IPR002110 GO:0005515
Prci1g3575 531 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Prci1g3575 531 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Prci1g3575 531 ProSiteProfiles Ankyrin repeat region circular profile. 172 204 - -
Prci1g3575 531 ProSiteProfiles Ankyrin repeat profile. 242 270 IPR002110 GO:0005515
Prci1g3575 531 SUPERFAMILY PapD-like 2 150 IPR008962 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3575 364 483 Ion Channels AT4G32500 30.464 1.68e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3575 - - qsa:O6P43_006204 835.484