Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3532 ATGGTGTTCTGTGATCACTGTGGTAGAAATGTAAATGGAATGCGACCGGATGACACTTCATTATGTTGTGAACGCTGTGGGAAGGTGTTGGAAGATTTGTATCTTACTCAAGAGGCCACTTTCGTTAAAGATGCATCTGGGCAGAGCAAACTATCTGGTAATTTTGTAAGAACAATTCAAAGCGAGTATTCTGCTTCCCGCCAAAGAACATTAGAGAGAGCACTTGAAGACATAAGATACCTAAGCCAAAACCTTGGAGTGGAGGATACTAATTTGTCCTCACAAGCATTGGCCTTCTATAAAATAGCAATTGAACGGAATTTCACAAGGGGACGAAAATCAGAGCAAGTACAGGCTGCCTGTCTATACATTGCATTCCGGGAAAATAATAAGCCATTCCTTCTCATTGATTTTTCAAATTATTTGAGGACAAATGTTTATGTTCTAGGTGCAGTTTTTTTACAACTTTGTAAAGTATTAAGGCTTGAAGAGCACCCAATTGTTCAAAAACCTGTTGATCCTAGTCTTTTTATTTTTAAATATACAAAGAATTTATTAAATCAAAGGAATATGGTTGTCACGGAAACTGCACTGAGCATTGTTGCAAGCATGAAACGTGATTGGATGCAGGTCGGGAGAAAGCCTAGTGGCTTATGTGGTGCGGCATTGTACATAGCTGCCCTTGCCCACGGTTTTAAATGCTCAAAGTCTGACATCCTAAGAATTGTCCATGTATGTGAAGCAACATTGACCAAGCGTTTGGTTGAGTTTGAGAATACAACCTCTGCAAGCTTGACTGTTGAGGAGTTGAATACGATGGCAAAAGAGCGTGAAAAAATTCCTATAGAAAAACCAAATTGTGGATCAGAGGAACATGCCTCAAAGGATCTACTGTGTGAACACAAGGATAGTGGTGTCCCACATTATGCCCATGGATTATGTGAAACATGCTATAAGGATTTTGTTAAACTCTCTGGAGGACTTGATGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGACAGAATAACAAAATCTCTTTGCGAGGAAACTGGCAACCAATCAAGTGATTTGGCAAAAGCATCAAATGGTGCATGTGCTGGCGGGAAAGACGAGTTGCATGCTTCTGGGCTTGAAAGTGTTGGGGCTGATGTTGAGCAAATGGCTACTAAAGATGGTGGGAATGATGAATCACATAGAGAAGATACGAGTTCTAAAACTCATGATGATTCAGAAAGTCTATCTGATATTGATGATTTGGAGGTTGAAGGCTACCTTCACAATGAGGAGGAGAAGCATTACAAGACGCTTATATGGACTGAAATGAATAGGGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCCGCTGCTGCTGCTAAGGAAGCTTTTGAGGCAAATTTTCAAAATTGTTCTGAGGATATGCGAGCAGCAAAAGAGCTTGCTGAATCTGCTGCTGCAGCTGTAGCCAAATCCAGAAAGGAAAAGAAGCAGAGACGTGCTGAAGAGGCAAAAAATTCAGGGCCTGCACAATCTGCTGCAGAGGCTACTCGGAAAATGTTGATAAATAAGAGGCTCAGCTCCAAAGTCAATCTTGACCGCTTGGATAATCTATTTGATGATATTGAGGCTCCGGAGAGCAAGAAAGTACGATTTGAGCTGCACTCTGACAAAGATGGTAAATTAGAGCCTGAGCTAGAGGACAAAGACAATGGTCATCTGGGATCAGTTGATGAACTTGAGGATGGAGATTATATGGGCAAGGAAAATTATTTGTATGATGAAAATTTGGAGGAATATGACTATGGAGATGATTATGGCGATGATACTTACTGA 1842 0.4137 MVFCDHCGRNVNGMRPDDTSLCCERCGKVLEDLYLTQEATFVKDASGQSKLSGNFVRTIQSEYSASRQRTLERALEDIRYLSQNLGVEDTNLSSQALAFYKIAIERNFTRGRKSEQVQAACLYIAFRENNKPFLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIFKYTKNLLNQRNMVVTETALSIVASMKRDWMQVGRKPSGLCGAALYIAALAHGFKCSKSDILRIVHVCEATLTKRLVEFENTTSASLTVEELNTMAKEREKIPIEKPNCGSEEHASKDLLCEHKDSGVPHYAHGLCETCYKDFVKLSGGLDGGLDPPAFQRAERDRITKSLCEETGNQSSDLAKASNGACAGGKDELHASGLESVGADVEQMATKDGGNDESHREDTSSKTHDDSESLSDIDDLEVEGYLHNEEEKHYKTLIWTEMNREYLEEQAAKEAAAAAAKEAFEANFQNCSEDMRAAKELAESAAAAVAKSRKEKKQRRAEEAKNSGPAQSAAEATRKMLINKRLSSKVNLDRLDNLFDDIEAPESKKVRFELHSDKDGKLEPELEDKDNGHLGSVDELEDGDYMGKENYLYDENLEEYDYGDDYGDDTY 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3532 613 FunFam Cyclin/Brf1-like TBP-binding protein 409 459 - -
Prci1g3532 613 Gene3D - 173 267 - -
Prci1g3532 613 MobiDBLite consensus disorder prediction 557 584 - -
Prci1g3532 613 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Prci1g3532 613 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 532 IPR000812 GO:0006352|GO:0070897
Prci1g3532 613 MobiDBLite consensus disorder prediction 491 517 - -
Prci1g3532 613 FunFam Transcription factor IIIB subunit 173 262 - -
Prci1g3532 613 MobiDBLite consensus disorder prediction 391 419 - -
Prci1g3532 613 Gene3D - 63 165 - -
Prci1g3532 613 MobiDBLite consensus disorder prediction 392 415 - -
Prci1g3532 613 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Prci1g3532 613 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Prci1g3532 613 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Prci1g3532 613 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Prci1g3532 613 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Prci1g3532 613 Coils Coil 489 509 - -
Prci1g3532 613 SMART cyclin_7 76 158 IPR013763 -
Prci1g3532 613 SMART cyclin_7 176 259 IPR013763 -
Prci1g3532 613 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Prci1g3532 613 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Prci1g3532 613 Gene3D Single helix bin 408 459 - -
Prci1g3532 613 SUPERFAMILY Cyclin-like 172 269 IPR036915 -
Prci1g3532 613 MobiDBLite consensus disorder prediction 491 506 - -
Prci1g3532 613 Pfam Brf1-like TBP-binding domain 417 542 IPR011665 -
Prci1g3532 613 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3532 Prci-Chr1 52430026 52455532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3532 1 523 Inorganic Solute Cotransporters AT2G01280 41.210 6.82e-112 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3532 K15196 - gmx:100789154 709.523