Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3523 ATGAGTTTTCAGCAATTTAAAAATGGTGGTGATGGTTTCCGTGGGGCTACAAAACAATTATCCTCCGCTCCTCTTCTAGTTTCCCATCCTCCTCTCTCTAAAAATTTCGGGGCTATGGGTGGTTCTAGCGAGATCGAGTCTAACAAATCTGAGATTGGATTTCAGATTCTGAACGCCTCCTTCATGGACACCAGAGCAGCCCATAAAAGCGTCGGTGAAGCCGATGGGCATTTTCCGGCCGAGACAAACGGCCTGTCATTGAAACCGAATGAAGAAGTTGAATCTAGGAGGTCCGGTGCTGGCAAAAGAGGCTCCATAAAGCTGTGTGCCAGGGGCCACTGGAGGCCAGGTGAAGATGCCAAGCTCAAAGAACTGGTGGCTCAGTATGGTCCTCAAAACTGGAACTTGATTGCCGAGCATCTCGACGGGCGATCAGGCAAGAGCTGCAGGCTGAGGTGGTTTAATCAGCTGGATCCCAGGATTAACAGGAGGGCTTTCTCTGATGAAGAAGAGGAGAGACTGCTGGCTGCTCACAAGGCGTACGGTAACAAGTGGGCTTTGATTGCAAGGCTGTTTCCCGGGAGGACCGATAATGCAGTGAAGAACCACTGGCACGTGATCATGGCCAGGAGACAGAGAGAGCAGTCACACGTTTTCAGGAGGAGGAAACCCACTTCTGAAAACATTCCGAAGGGATTAAAGCTGACTCTGACCAACAATGCAGGCAGCGAATCGAGCATCTCAAGCACCAGAGACGAGTCCGCTTCGACCTGCACTAATCTCTCGCTAACCCCCTCGTCCGCCAAACCTTCTCCCTTTTGCTCTAATCTGGGCCCAGTTCAGAGTCTTCAAGGCCTGGAAACACTGATCGGTGGATCCAGGGATGCGGGTTTTGACAAGTTATTTGGCATGCGAATGGGGAAGGTTGCGGAGCAATCAAATAATAATTCTGATTCAAAGTCGGAAGTATCAGCGTGTGAGTCAGTGGGCAACAACAGGAACAGTTTGTCATACTCTGGGGAAAGTGAAAGCGTGGGCGATAAAATTGACATGCCATTCATTGATTTCCTGGGAGTGGGAGCTGCCGCATGA 1092 0.5037 MSFQQFKNGGDGFRGATKQLSSAPLLVSHPPLSKNFGAMGGSSEIESNKSEIGFQILNASFMDTRAAHKSVGEADGHFPAETNGLSLKPNEEVESRRSGAGKRGSIKLCARGHWRPGEDAKLKELVAQYGPQNWNLIAEHLDGRSGKSCRLRWFNQLDPRINRRAFSDEEEERLLAAHKAYGNKWALIARLFPGRTDNAVKNHWHVIMARRQREQSHVFRRRKPTSENIPKGLKLTLTNNAGSESSISSTRDESASTCTNLSLTPSSAKPSPFCSNLGPVQSLQGLETLIGGSRDAGFDKLFGMRMGKVAEQSNNNSDSKSEVSACESVGNNRNSLSYSGESESVGDKIDMPFIDFLGVGAAA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3523 363 MobiDBLite consensus disorder prediction 311 342 - -
Prci1g3523 363 CDD SANT 165 205 IPR001005 -
Prci1g3523 363 Gene3D - 165 225 - -
Prci1g3523 363 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Prci1g3523 363 Gene3D - 111 162 - -
Prci1g3523 363 MobiDBLite consensus disorder prediction 239 262 - -
Prci1g3523 363 ProSiteProfiles Myb-like domain profile. 111 157 IPR001005 -
Prci1g3523 363 PANTHER MYB PROTEIN-RELATED 111 272 - -
Prci1g3523 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 157 IPR017930 -
Prci1g3523 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 212 IPR017930 -
Prci1g3523 363 MobiDBLite consensus disorder prediction 74 99 - -
Prci1g3523 363 Pfam Myb-like DNA-binding domain 114 174 - -
Prci1g3523 363 MobiDBLite consensus disorder prediction 311 345 - -
Prci1g3523 363 CDD SANT 114 155 IPR001005 -
Prci1g3523 363 SMART sant 162 210 IPR001005 -
Prci1g3523 363 SMART sant 110 159 IPR001005 -
Prci1g3523 363 FunFam MYB transcription factor 111 162 - -
Prci1g3523 363 SUPERFAMILY Homeodomain-like 111 204 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3523 Prci-Chr1 52283201 52285858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3523 101 362 MYB Transcription Factor Family AT5G17800 47.273 1.40e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g3523 Myb_DNA-bind_6 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3523 K09422 - qsu:111993092 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3523 1 52283201 52285858 Prci1g3523 1 52283201 52285858 ECH