Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3522 ATGAGTTTTCAGCAATTTAAAAATGGTGGTGATGGTTTCCGTGGGGCTACAAAACAATTATCCTCCGCTCCTCTTCTAGTTTCCCATCCTCCTCTCTCTAAAAATTTCGGGGCTATGGGTGGTTCTAGCGAGATCGAGTCTAACAAATCTGAGATTGGATTTCAGATTCTGAACGCCTCCTTCATGGACACCAGAGCAGCCCATAAAAGCGTCGGTGAAGCCGATGGGCATTTTCCGGCCGAGACAAACGGCCTGTCATTGAAACCGAATGAAGAAGTTGAATCTAGGAGGTCCGGTGCTGGCAAAAGAGGCTCCATAAAGCTGTGTGCCAGGGGCCACTGGAGGCCAGGTGAAGATGCCAAGCTCAAAGAACTGGTGGCTCAGTATGGTCCTCAAAACTGGAACTTGATTGCCGAGCATCTCGACGGGCGATCAGATAGGAAAAGATCGATTTCAAGTCCATCGTCTCCGAGAAATAAACCTGTTCTCACGTGTTTTTCAAAAACATTTGGGTGCACAGGCAAGAGCTGCAGGCTGAGGTGGTTTAATCAGCTGGATCCCAGGATTAACAGGAGGGCTTTCTCTGATGAAGAAGAGGAGAGACTGCTGGCTGCTCACAAGGCGTACGGTAACAAGTGGGCTTTGATTGCAAGGCTGTTTCCCGGGAGGACCGATAATGCAGTGAAGAACCACTGGCACGTGATCATGGCCAGGAGACAGAGAGAGCAGTCACACGTTTTCAGGAGGAGGAAACCCACTTCTGAAAACATTCCGAAGGGATTAAAGCTGACTCTGACCAACAATGCAGGCAGCGAATCGAGCATCTCAAGCACCAGAGACGAGTCCGCTTCGACCTGCACTAATCTCTCGCTAACCCCCTCGTCCGCCAAACCTTCTCCCTTTTGCTCTAATCTGGGCCCAGTTCAGAGTCTTCAAGGCCTGGAAACACTGATCGGTGGATCCAGGGATGCGGGTTTTGACAAGTTATTTGGCATGCGAATGGGGAAGGTTGCGGAGCAATCAAATAATAATTCTGATTCAAAGTCGGAAGTATCAGCGTGTGAGTCAGTGGGCAACAACAGGAACAGTTTGTCATACTCTGGGGAAAGTGAAAGCGTGGGCGATAAAATTGACATGCCATTCATTGATTTCCTGGGAGTGGGAGCTGCCGCATGA 1176 0.4957 MSFQQFKNGGDGFRGATKQLSSAPLLVSHPPLSKNFGAMGGSSEIESNKSEIGFQILNASFMDTRAAHKSVGEADGHFPAETNGLSLKPNEEVESRRSGAGKRGSIKLCARGHWRPGEDAKLKELVAQYGPQNWNLIAEHLDGRSDRKRSISSPSSPRNKPVLTCFSKTFGCTGKSCRLRWFNQLDPRINRRAFSDEEEERLLAAHKAYGNKWALIARLFPGRTDNAVKNHWHVIMARRQREQSHVFRRRKPTSENIPKGLKLTLTNNAGSESSISSTRDESASTCTNLSLTPSSAKPSPFCSNLGPVQSLQGLETLIGGSRDAGFDKLFGMRMGKVAEQSNNNSDSKSEVSACESVGNNRNSLSYSGESESVGDKIDMPFIDFLGVGAAA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3522 391 CDD SANT 193 233 IPR001005 -
Prci1g3522 391 SUPERFAMILY Homeodomain-like 110 147 IPR009057 -
Prci1g3522 391 Gene3D - 111 190 - -
Prci1g3522 391 MobiDBLite consensus disorder prediction 339 370 - -
Prci1g3522 391 Pfam Myb-like DNA-binding domain 111 146 IPR001005 -
Prci1g3522 391 Pfam Myb-like DNA-binding domain 191 234 IPR001005 -
Prci1g3522 391 SUPERFAMILY Homeodomain-like 172 241 IPR009057 -
Prci1g3522 391 CDD SANT 114 183 IPR001005 -
Prci1g3522 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 146 IPR017930 -
Prci1g3522 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 240 IPR017930 -
Prci1g3522 391 ProSiteProfiles Myb-like domain profile. 111 185 IPR001005 -
Prci1g3522 391 Gene3D - 193 253 - -
Prci1g3522 391 MobiDBLite consensus disorder prediction 339 373 - -
Prci1g3522 391 PANTHER MYB PROTEIN-RELATED 111 300 - -
Prci1g3522 391 SMART sant 110 187 IPR001005 -
Prci1g3522 391 SMART sant 190 238 IPR001005 -
Prci1g3522 391 ProSiteProfiles Myb-like domain profile. 186 236 IPR001005 -
Prci1g3522 391 MobiDBLite consensus disorder prediction 268 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3522 Prci-Chr1 52283187 52285858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3522 101 390 MYB Transcription Factor Family AT5G17800 42.904 1.97e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g3522 Myb_DNA-binding 5.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3522 K09422 - qsu:111993092 355.14