Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3516 ATGGGAAGGCCTCCTTGCTGTGAGAAAGTTGGCATCAAGAAGGGTCCGTGGACACCTGAGGAGGACATCATTCTTGTTTCTTACATTCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTATTAACACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACGAACTACCTCAGGCCAGGAATCAAGAGAGGAAACTTCACTCCCCACGAGGAAGGAACGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCGTACCTTCCTCAAAGGACAGACAACGATATAAAGAACTATTGGAACACCCATCTGAAGAAGAAGCTGAAAAAATTTCAAGCAGGATTGGACCCCCACATGGCAGCAAACTCCACGACAACTAGTCAGCTTGTGTCAAAAAGCTTTAATGAGGGAAGGGATTCAGATATGACGGGAAACCATGGCTCGTCTCAAAGGTCAAGTCAGTCTGAATCATCCACCTATGCATCAAGCGCTGAGAATATCTCACGCCTCCTAGAAGGTTGGATGAGATCCTCTCCTAAGCCAGACACAACCACTCTTCTCAAAGCAAACCAAGACCAGAAAGAGCTTCCGAGCAACAGCAACATCCAAAATAGCAGTAACATGGTGAATTCTGCTCTAAGTTTGGTGTCCAACCAAACCAAAGACGAGCGAGAAGAGGGCGGTGCTGATATGATGTCCCATGAAGAGTTTGATTCCATTTTGTCTTATGAGAACCTTCGTAATACTGCCTGGGACAAGTCCACAGGCGATTCTATGCCTCCAACTCAAAAGAGTTCTGAAGCTGCTGCTGTTGCTGATGACAAGGCTCATGTTGTGGCTCGTGATGAGGGGAATAAGCAAAGATCTGAGAACACTGCGGATCCTCCATTGTCAGTTTTTGAGAAGTGGCTCTTGGATGAAAATGTTGGTCAAGTAGAGGAGATGATGGGATTATCCCTCACTTTCTAA 993 0.4602 MGRPPCCEKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGTIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAGLDPHMAANSTTTSQLVSKSFNEGRDSDMTGNHGSSQRSSQSESSTYASSAENISRLLEGWMRSSPKPDTTTLLKANQDQKELPSNSNIQNSSNMVNSALSLVSNQTKDEREEGGADMMSHEEFDSILSYENLRNTAWDKSTGDSMPPTQKSSEAAAVADDKAHVVARDEGNKQRSENTADPPLSVFEKWLLDENVGQVEEMMGLSLTF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3516 330 CDD SANT 69 112 IPR001005 -
Prci1g3516 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci1g3516 330 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci1g3516 330 FunFam Transcription factor MYB60 68 138 - -
Prci1g3516 330 CDD SANT 16 61 IPR001005 -
Prci1g3516 330 MobiDBLite consensus disorder prediction 261 304 - -
Prci1g3516 330 FunFam MYB-related transcription factor 13 66 - -
Prci1g3516 330 MobiDBLite consensus disorder prediction 278 297 - -
Prci1g3516 330 SMART sant 13 63 IPR001005 -
Prci1g3516 330 SMART sant 66 114 IPR001005 -
Prci1g3516 330 MobiDBLite consensus disorder prediction 142 171 - -
Prci1g3516 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci1g3516 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Prci1g3516 330 Gene3D - 13 66 - -
Prci1g3516 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Prci1g3516 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci1g3516 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 226 - -
Prci1g3516 330 Gene3D - 68 141 - -
Prci1g3516 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3516 Prci-Chr1 52243312 52245050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3516 1 146 MYB Transcription Factor Family AT5G62470 78.378 4.11e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g3516 Myb_DNA-binding 6.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3516 K09422 - gmx:100817854 434.876