Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3423 ATGTCAAATAGCAGAAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTCAGCTGCGGGGGCGAGATGTGGTTTGCCCTAATTGTAATGAGGGATTTATTCAAGAACTTCATGATATGGTCATCAACCCACTGGAATTCTTTGGACTAGACAATGTTGAAGAGCGTGACCGGAGGTTCAGAATTATGGAAGCCTTCTCTGCTTTTATGAGGCATCGACCAGTAAATAGAAGCCATAGGCATGACATCGTAGTTGGATCAGATTCAATTCCTGAACATGGACCAGGGTATGCTCCTTTGCTGCTCTTTGGTGGCCAGATTCCTGTCAGATTGTCTGGACATGGTGGTTTCGAAGCTCTTTTCAATGGGACTCCTGGAATTGGTCTAATGCAAGGCAATACAGGCGATTATTTTATTGGTCCTGGACTGGAAGAACTGTTCGGACAGCTTTCAGCTAATGACAGGCGAGGTCCTCCTCCAGCTTCCAGGTCCTCAATAGATGCAATGCCTACTATTAGAATCACACATAAGCTTCTTCGTTCAGACTCACATTGTCCAGTATGCCAAGATAAATTTGAGCTGGGGTCAGAAGCAAGGCAAATGCCATGCAAACATATATATCACTCTGATTGTATTGTTCCCTGGTTGGTACAGCATAACTCCTGCCCTGTTTGTCGCCAGGAGTTGCCACCACAAGGATTGAGCGGCAACCGTGGCTCCAATGGTAGAACTAGAGGCAGTTCTGGCAGTAACAATGGCAATGAAAGGGCAAGTGGTAGGGAGAACCAGGGAAGGCGGAACCCATTCTCCTATTTTTGGCCTTTTCGTTCATCCAATTCTAGCAACAATGGAGCAGGGGGAAGTAGCTCACCAACACAGCCTATCCCTGAGAATAGCCACCACACCGGCTATTCCGGCTGGCCATTTGAGTAA 933 0.4695 MSNSRNTHWCYSCRRPVQLRGRDVVCPNCNEGFIQELHDMVINPLEFFGLDNVEERDRRFRIMEAFSAFMRHRPVNRSHRHDIVVGSDSIPEHGPGYAPLLLFGGQIPVRLSGHGGFEALFNGTPGIGLMQGNTGDYFIGPGLEELFGQLSANDRRGPPPASRSSIDAMPTIRITHKLLRSDSHCPVCQDKFELGSEARQMPCKHIYHSDCIVPWLVQHNSCPVCRQELPPQGLSGNRGSNGRTRGSSGSNNGNERASGRENQGRRNPFSYFWPFRSSNSSNNGAGGSSSPTQPIPENSHHTGYSGWPFE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3423 310 MobiDBLite consensus disorder prediction 230 310 - -
Prci1g3423 310 CDD RING-H2_RNF126-like 185 226 - -
Prci1g3423 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 230 - -
Prci1g3423 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 232 IPR013083 -
Prci1g3423 310 Pfam Ring finger domain 184 226 IPR001841 -
Prci1g3423 310 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Prci1g3423 310 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Prci1g3423 310 SUPERFAMILY RING/U-box 165 232 - -
Prci1g3423 310 MobiDBLite consensus disorder prediction 272 300 - -
Prci1g3423 310 SMART ring_2 185 225 IPR001841 -
Prci1g3423 310 MobiDBLite consensus disorder prediction 233 258 - -
Prci1g3423 310 FunFam E3 ubiquitin-protein ligase RING1-like 149 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3423 Prci-Chr1 51677720 51680306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3423 120 230 C3H Transcription Factor Family AT5G01980 41.739 8.05e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3423 K11982 - jre:109008136 463.766