Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3408 ATGAAGCCCGGGTCCTTGGATTACTGGAGGAGTTACTTTCGGACGGCGAACTCGGATATATTTGATATTATCGACCATGCGATCATGGTGGCCGCTTCTGATTGTCCGAAGGAGTTTCGGTTGCGAAGAGATGGAATCGCGGAACGGCTGTTTTCTTGTCTGATGACTCGTTGTTTGGGATGTGAGCGACTGGAATGGGCGGTGTCCGGTGTTGACGAGGAGTACGACGGAGGTTGCAAGAGTGGTTTTAATGGAGATGGAGTTGAAGTGGAAGCGGGTGCAAGCAAAGAGAGCAAGGCCCATAGTAGCAGAGACGACCACGGGGAGATGAACATGAACCACTTTAACAATTATAGCTATGGAGAAGCTGAAGCATTGACGGATGATATTGAAGAGGAGTCTCAATTAGTTCGAGAAATTTTGAGGATCAAGGAAATTCTTCGTAACAGCGAAGGAGAGTCTGAGTCGGAATTATTTGAGTCGTTGAGGAGGCTCCAGCTGATGGAACTGACTGTGGATCTTCTTAAGGCGACCGAGATTGGAAAGGCTGTCAATCCTTTCCGAAAGCATGGATCAAAGGACATTCGTCAACTTGCGCGGACTCTTATTGATGGCTGGAAAGAAATGGTAGATGAGTGGGTCAATGCCACCACAACCAATACTGGTTCTGAAGGTACCCCAGATTCAGTAAATCCATCGGTTGTTGATGAAGAAGAAGAAGAAGAAGAAGAAGGGCTTCCATCACCTCCGATGGATGAAGGGGCTTTCTTTGCAGCTCAAACTGCCTCAATGGAGCTGTCACAGTTCTTCGACGGGATGGATGATGATGGAAATCCTCGACAGGGTGGGGAATTCATCAAGAACCGGGAACATGGCAGAAGACCAGCTCTGGACAATCAAAACATAGTAAGAAGGAAACAACAGACTTCCGATGGGGTGGACACTGTAGTTAAGGTCATCAAAAGTCAGCAAATCAAGGGAAATGAGGCTTCTGTGAAGCTAAATAAATCAGCAACTGTTGGTTCTGGTCCTGGTAGACCATTAAAATCAAGCATGCAACGAAGAGAGAATATGGAGCCAAGGATGTTGCAAAAGATGGACAGGAGTGGTGTCCCCAAGAGGCCTCCTCTTGCTGGCCAGCAAGATAAGTCGAAGTGCTCATATGATGCTTCAGTCCAAATGAAGCTAGAAGCCACTAAGAGGAAACTCCAGGAGAGTTATCAACAAGCTGAAAATGCCAAGAAGCAGCGAACAATCCAGGTTATGGAGTTGCATGATCTCCCCAAGCAAGGGGGGATAAACCACCGGAATACACCTTTCAAACCTATGAAGAATCATAACAGGAACTGGGCTCAGGGACGAAGGTAG 1368 0.4715 MKPGSLDYWRSYFRTANSDIFDIIDHAIMVAASDCPKEFRLRRDGIAERLFSCLMTRCLGCERLEWAVSGVDEEYDGGCKSGFNGDGVEVEAGASKESKAHSSRDDHGEMNMNHFNNYSYGEAEALTDDIEEESQLVREILRIKEILRNSEGESESELFESLRRLQLMELTVDLLKATEIGKAVNPFRKHGSKDIRQLARTLIDGWKEMVDEWVNATTTNTGSEGTPDSVNPSVVDEEEEEEEEGLPSPPMDEGAFFAAQTASMELSQFFDGMDDDGNPRQGGEFIKNREHGRRPALDNQNIVRRKQQTSDGVDTVVKVIKSQQIKGNEASVKLNKSATVGSGPGRPLKSSMQRRENMEPRMLQKMDRSGVPKRPPLAGQQDKSKCSYDASVQMKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGGINHRNTPFKPMKNHNRNWAQGRR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3408 455 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 445 IPR044805 -
Prci1g3408 455 CDD TFIIS_I 139 211 - -
Prci1g3408 455 MobiDBLite consensus disorder prediction 425 455 - -
Prci1g3408 455 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Prci1g3408 455 SMART TFS2_5 137 212 IPR003617 GO:0005634
Prci1g3408 455 Coils Coil 393 420 - -
Prci1g3408 455 MobiDBLite consensus disorder prediction 352 368 - -
Prci1g3408 455 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 224 IPR035441 -
Prci1g3408 455 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 224 IPR035441 -
Prci1g3408 455 MobiDBLite consensus disorder prediction 217 251 - -
Prci1g3408 455 MobiDBLite consensus disorder prediction 233 248 - -
Prci1g3408 455 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Prci1g3408 455 MobiDBLite consensus disorder prediction 336 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3408 Prci-Chr1 51487308 51490947 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Prci1g3408 Med26 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3408 - - gmx:100775579 608.986