Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3407 ATGAAGCCCGGGTCCTTGGATTACTGGAGGAGTTACTTTCGGACGGCGAACTCGGATATATTTGATATTATCGACCATGCGATCATGGTGGCCGCTTCTGATTGTCCGAAGGAGTTTCGGTTGCGAAGAGATGGAATCGCGGAACGGCTGTTTTCTTGTCTGATGACTCGTTGTTTGGGATGTGAGCGACTGGAATGGGCGGTGTCCGGTGTTGACGAGGAGTACGACGGAGGTTGCAAGAGTGGTTTTAATGGAGATGGAGTTGAAGTGGAAGCGGGTGCAAGCAAAGAGAGCAAGGCCCATAGTAGCAGAGACGACCACGGGGAGATGAACATGAACCACTTTAACAATTATAGCTATGGAGAAGCTGAAGCATTGACGGATGATATTGAAGAGGAGTCTCAATTAGTTCGAGAAATTTTGAGGATCAAGGAAATTCTTCGTAACAGCGAAGGAGAGTCTGAGTCGGAATTATTTGAGTCGTTGAGGAGGCTCCAGCTGATGGAACTGACTGTGGATCTTCTTAAGGCGACCGAGATTGGAAAGGCTGTCAATCCTTTCCGAAAGCATGGATCAAAGGACATTCGTCAACTTGCGCGGACTCTTATTGATGGCTGGAAAGAAATGGTAGATGAGTGGGTCAATGCCACCACAACCAATACTGGTTCTGAAGGTACCCCAGATTCAGTAAATCCATCGGTTGTTGATGAAGAAGAAGAAGAAGAAGAAGAAGGGCTTCCATCACCTCCGATGGATGAAGGGGCTTTCTTTGCAGCTCAAACTGCCTCAATGGAGCTGTCACAGTTCTTCGACGGGATGGATGATGATGGAAATCCTCGACAGGGTGGGGAATTCATCAAGAACCGGGAACATGGCAGAAGACCAGCTCTGGACAATCAAAACATAGTAAGAAGGAAACAACAGACTTCCGATGGGGTGGACACTGTAGTTAAGGTCATCAAAAGTCAGCAAATCAAGGGAAATGAGGCTTCTGTGAAGCTAAATAAATCAGCAACTGTTGGTTCTGGTCCTGGTAGACCATTAAAATCAAGCATGCAACGAAGAGAGAATATGGAGCCAAGGATGTTGCAAAAGATGGACAGGAGTGGTGTCCCCAAGAGGCCTCCTCTTGCTGGCCAGCAAGATTCGAAGTGCTCATATGATGCTTCAGTCCAAATGAAGCTAGAAGCCACTAAGAGGAAACTCCAGGAGAGTTATCAACAAGCTGAAAATGCCAAGAAGCAGCGAACAATCCAGGTTATGGAGTTGCATGATCTCCCCAAGCAAGGGGGGATAAACCACCGGAATACACCTTTCAAACCTATGAAGAATCATAACAGGAACTGGGCTCAGGGACGAAGGTAG 1365 0.4718 MKPGSLDYWRSYFRTANSDIFDIIDHAIMVAASDCPKEFRLRRDGIAERLFSCLMTRCLGCERLEWAVSGVDEEYDGGCKSGFNGDGVEVEAGASKESKAHSSRDDHGEMNMNHFNNYSYGEAEALTDDIEEESQLVREILRIKEILRNSEGESESELFESLRRLQLMELTVDLLKATEIGKAVNPFRKHGSKDIRQLARTLIDGWKEMVDEWVNATTTNTGSEGTPDSVNPSVVDEEEEEEEEGLPSPPMDEGAFFAAQTASMELSQFFDGMDDDGNPRQGGEFIKNREHGRRPALDNQNIVRRKQQTSDGVDTVVKVIKSQQIKGNEASVKLNKSATVGSGPGRPLKSSMQRRENMEPRMLQKMDRSGVPKRPPLAGQQDSKCSYDASVQMKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGGINHRNTPFKPMKNHNRNWAQGRR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3407 454 CDD TFIIS_I 139 211 - -
Prci1g3407 454 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Prci1g3407 454 SMART TFS2_5 137 212 IPR003617 GO:0005634
Prci1g3407 454 MobiDBLite consensus disorder prediction 352 368 - -
Prci1g3407 454 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 224 IPR035441 -
Prci1g3407 454 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 224 IPR035441 -
Prci1g3407 454 MobiDBLite consensus disorder prediction 217 251 - -
Prci1g3407 454 Coils Coil 392 419 - -
Prci1g3407 454 MobiDBLite consensus disorder prediction 336 386 - -
Prci1g3407 454 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 444 IPR044805 -
Prci1g3407 454 MobiDBLite consensus disorder prediction 233 248 - -
Prci1g3407 454 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Prci1g3407 454 MobiDBLite consensus disorder prediction 424 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3407 Prci-Chr1 51487303 51490947 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Prci1g3407 Med26 4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3407 - - gmx:100775579 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3407 1 51487303 51490947 Prci1g3407 1 51487303 51490947 ECH