Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3401 ATGCAGCAGCAGATGGAGAACTCCGAGCTCTACCAATTCCTCGCCGGCAACGGCGCTTCCTTCTTTACTCCCACGTCGTACGGCCTGCCCCCTGCCGCCGCCTCCACAATGCACAGTTTCTGCAGTTCCTCTTATTATCCCCTGGATTCTTCTGAAATCACGGACACACCCCAGCAAGACAGAGCCCTCGCCGCTTTGAAGAATCACAAGGAGGCTGAGAAGCGCAGGAGAGAGAGGATAAATTCCCACCTCGATAAGCTTCGCACCCTTCTTCCCTGTAATTCCAAGACTGACAAGGCCTCGCTTCTAGCCAAGGTTGTCCAGCGAGTGAGAGAGCTGAAACAGCAAACTTCACAGATCACCGAACTCGAAACCATTCCTTCAGAGACAGACGAAATCACCGTCCTGTCTACCAGCGGCGACTACGCCGGAGACGGCAGGCTCATATTCAAAGCCTCCCTATGCTGCGAAGATCGCTCCGACCTCATACCTGATCTCATCGAAATCCTAAAGTCGCTGCATCTAAAAACCCTCAAGGCAGAAATGGCAACACTGGGAGGAAGAACCCGTAACGTTCTTATTGTGGCCGCCGATGATGACCACAGTATCGAATCCATCCACTTCCTCCAGAACGCATTGAAATCATTGCTTGAACGCTCCAATTCAAGCGAAAGATCCAAACGGCGTCGTGTACTGGACCGCAAATTGATTGTCTGA 717 0.5216 MQQQMENSELYQFLAGNGASFFTPTSYGLPPAAASTMHSFCSSSYYPLDSSEITDTPQQDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVRELKQQTSQITELETIPSETDEITVLSTSGDYAGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATLGGRTRNVLIVAADDDHSIESIHFLQNALKSLLERSNSSERSKRRRVLDRKLIV 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3401 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
Prci1g3401 238 CDD bHLH_AtAIG1_like 59 135 - -
Prci1g3401 238 SMART finulus 70 119 IPR011598 GO:0046983
Prci1g3401 238 Gene3D - 59 126 IPR036638 GO:0046983
Prci1g3401 238 FunFam transcription factor bHLH30 59 122 - -
Prci1g3401 238 Pfam Helix-loop-helix DNA-binding domain 68 113 IPR011598 GO:0046983
Prci1g3401 238 PANTHER TRANSCRIPTION FACTOR BHLH30 45 233 IPR045847 GO:0003700|GO:0006355
Prci1g3401 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 124 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3401 Prci-Chr1 51393272 51395385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3401 1 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 63.675 3.40e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1g3401 HLH 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3401 - - qsa:O6P43_006349 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3401 1 51393272 51395385 Prci1g3401 1 51393272 51395385 ECH