Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3391 ATGTCTTTGGACGACTCTCTAAGATCTCTATCCATGGACTATCTTAACCTGCTCATCAACGGTCAAGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGTCGACTGGTTCACGCCCACCGCTGCATCCTGGCGGCTCGAAGCCTCTTCTTCAGGAAATTCTTCTGCGGCCCAGACCCACCGTCTGGTCTGGACCCTGCCTCAGGCTCGCGGGTCAACTCCGCTAACTCTACATCGAGGCCCGGGGTCATTCCGGTGAACTCGGTGGGCTATGAAGTGTTTCTGCTTCTGCTTCAGTTCTTGTACAGTGGCCAAGTCTCTATTGTGCCTCAGAAGCACGAGCCCAGGCCTAATTGCGGCGAAAGGGGTTGTTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTTGATACTCTCGCTGCCGCTAGATCTTTTGGCGTTGAGCAGCTCGCATTGCTCACTCAGAAACAATTAGCCAGCATGGTAGAGAAGGCCTCCATTGAAGACGTGATGAAAGTGCTCCTAGCTTCAAGAAAGCAAGACATGCACCAACTCTGGACCACTTGTTCACATCTCGTTGCCAAGTCCGGTCTCCCTCCTGATGTGCTCGCCAAACACCTTCCCCTCGATGTTGTTGCTAAAATCGAAGAGCTCCGTGTCAAAACCTCCCTCGTCCGCCGCTCCCTAGTCCTCCACCACCACCCTCACCACCATCACGACCATATCAGCGCCACCGCGGATCTTGAGGACCAGAAAATCCGCAGAATGAGAAGGGCGCTTGACTCCTCCGACGTCGAACTCGTGAAGCTCATGGTCATGGGAGAAGGCTTAAATCTAGATGAAGCACTGGCCTTGCACTACGCCGTAGAGAATTGCAGCCGGGAAGTCGTCAAGGCCTTGTTGGAGCTGGGTGCAGCCGACGTCAACTACCCCGCAGGACCCGCCGGCAAGACCCCACTTCACCTTGCGGCCGAGATGGTGTCACCGGACATGGTGGCGGTCCTCCTTGACCACCACGCCGACCCGAACGTCCGGACCGTAGAAGGGGTGACTCCTCTTGACATCCTGAGAACCCTAACTTCTGATTTTCTGTTCAAAGGAGCCGTCCCTGGGCTTGCCCATATTGAGCCAAACAAATTGAGGCTGTGCTTGGAGCTGGTTCAATCCGCAGCTCTCGTACTGTCGCGCGAGGAAGGCAACGTGAATCCTCCTTCTTCAACGGCCATTTATCCCCCAATGAACGAAGACCATAACAGCAGTAGTAGCAACAGCAATATTGCGAACCTTAATCTGGACACCAGGTTGGTTTACCTGAATCTGGGAGCGACGTCGTCGTCGGGGCAAATGGGTTCCAGATTGGAGGGCGACAAGGATAGCAGCCACAATAGCCAGAACCGTCATAGCTCGCAAGGTGGATCATGCGACCCAGCAATGTACCACCAACCTCATGACTATAATTAA 1461 0.5483 MSLDDSLRSLSMDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPASGSRVNSANSTSRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPDVLAKHLPLDVVAKIEELRVKTSLVRRSLVLHHHPHHHHDHISATADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHLAAEMVSPDMVAVLLDHHADPNVRTVEGVTPLDILRTLTSDFLFKGAVPGLAHIEPNKLRLCLELVQSAALVLSREEGNVNPPSSTAIYPPMNEDHNSSSSNSNIANLNLDTRLVYLNLGATSSSGQMGSRLEGDKDSSHNSQNRHSSQGGSCDPAMYHQPHDYN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3391 486 ProSiteProfiles Ankyrin repeat profile. 315 347 IPR002110 GO:0005515
Prci1g3391 486 MobiDBLite consensus disorder prediction 399 425 - -
Prci1g3391 486 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 484 IPR044284 GO:0099402
Prci1g3391 486 Pfam Ankyrin repeats (3 copies) 263 345 IPR002110 GO:0005515
Prci1g3391 486 Gene3D Potassium Channel Kv1.1; Chain A 5 195 IPR011333 -
Prci1g3391 486 FunFam regulatory protein NPR5 isoform X1 4 195 - -
Prci1g3391 486 Gene3D - 247 363 IPR036770 -
Prci1g3391 486 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
Prci1g3391 486 SMART BTB_4 25 162 IPR000210 GO:0005515
Prci1g3391 486 SUPERFAMILY POZ domain 8 160 IPR011333 -
Prci1g3391 486 Pfam Domain of unknown function (DUF3420) 197 257 IPR024228 -
Prci1g3391 486 SMART ANK_2a 280 310 IPR002110 GO:0005515
Prci1g3391 486 SMART ANK_2a 315 344 IPR002110 GO:0005515
Prci1g3391 486 MobiDBLite consensus disorder prediction 445 486 - -
Prci1g3391 486 Pfam BTB/POZ domain 16 110 IPR000210 GO:0005515
Prci1g3391 486 CDD BTB_POZ_NPR_plant 8 162 - -
Prci1g3391 486 SUPERFAMILY Ankyrin repeat 274 358 IPR036770 -
Prci1g3391 486 ProSiteProfiles Ankyrin repeat region circular profile. 315 345 - -
Prci1g3391 486 MobiDBLite consensus disorder prediction 397 425 - -
Prci1g3391 486 FunFam regulatory protein NPR5 isoform X2 246 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3391 Prci-Chr1 51289564 51292792 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Prci1g3391 BTB 9.1e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3391 K14508 - zju:107433767 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3391 1 51289564 51292792 Prci3g2499 3 38039071 38042133 CCT
Prci1g3391 1 51289564 51292792 Prci1g3391 1 51289564 51292792 ECH