Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3317 ATGGCGAACTACGACCTAACCCCCCGGATCGCGCCGCACCTGGATAGACATCTCGTGTTCCCTCTTCTCGAATTCCTTCAGGAACGCCAGCTCTACGAGAATGATCAGATCCTCAAGGCTAAGATCGAGCTCCTTAACAAGACCAACATGGTCGACTATGCCATGGACATCCACAAGAGCCTCTACCATACCGAGGATGTACCCCAAGAGATGGTGGACATGAGGGCGGAAGTAGTTGCCAGGCTCAAGGCACAGGAGGAGGCCGCCGCACCGCTCGTTGCCTTTTTGCAGAACGCCAGCGCTGTCCAGGATTTGAAGGCTGACAAGCAGTATAATCTTCAGATGCTCAATGACAGATACCAGATTGGTCCTGAGCAAATAGAAGCATTGTATCAATATGCCAAATTTCAGTTTGAGTGTGGAAACTACTCTGGTGCCGCGGATTATCTTTATCAGTACAGGGCTTTATGCACAAATAGTGAAAGGAGTCTGAGTGCTTTATGGGGGAAGCTTGCAGCTGAGATATTGATGCAAAACTGGGACATTGCTCTTGAAGAGCTGAACCGTTTGAAAGAAATAATTGATTCAAAGAGTTTTGCATCACCTGCAAATCAGGTGCAAAGCAGAATATGGTTGATGCATTGGAGTCTCTTCATCTTTTTCAACCATGACAATGGAAGAACACAGATTATCGATCTGTTTAATCAGGACAAGTATTTGAATGCTATTCAAACTACTGCTCCGCACCTTTTGCGATACTTGGCCACAGCATTCATTGTCAACAAGCGCAGGAGGCCTCAATTCAAAGATTTCATTAAAGTTGTTCAGCAAGAGCAGCATTCATATAAAGATCCCATCACTGAATTTTTGGCATGTGTTTATGTCAACTATGACTTTGATGAGGCACAAAAGAAGATGAGCGAGTGTGAAGAAGTAATACTCAATGATCCCTTCCTTGGTAAACAAGTCGAGGATGGCAGCTTTTCAACTGTACCGTTGAGGGATGAGTTCCTTGAAAATGCCAGGCTATTCATCTTTGAGACATACTGCAGAATACACCAACGGATTGACATGGGACTGGTTTCACCAATTGCTGATGTTTGTGATAGAGTTCTTGCTGAGAAGTTAAATTTGAATTACGAGGAGGCTGAGAGATGGATTGTGAATCTCATTCGTAGCTCAAAGCTTGATGCCAAAATTGACTCTAAAACTGGAACTGTTATCATGGAACCCAATCATCCTAATGTATATGAGCAACTTATTGACCATACCAAGGCACTGTCAGGGCGTACTTACAAGTTAGTCAGCCAACTTCTGGAGCATGCACAAGCACAGTCAGCTCGATGA 1347 0.4439 MANYDLTPRIAPHLDRHLVFPLLEFLQERQLYENDQILKAKIELLNKTNMVDYAMDIHKSLYHTEDVPQEMVDMRAEVVARLKAQEEAAAPLVAFLQNASAVQDLKADKQYNLQMLNDRYQIGPEQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFASPANQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTTAPHLLRYLATAFIVNKRRRPQFKDFIKVVQQEQHSYKDPITEFLACVYVNYDFDEAQKKMSECEEVILNDPFLGKQVEDGSFSTVPLRDEFLENARLFIFETYCRIHQRIDMGLVSPIADVCDRVLAEKLNLNYEEAERWIVNLIRSSKLDAKIDSKTGTVIMEPNHPNVYEQLIDHTKALSGRTYKLVSQLLEHAQAQSAR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3317 448 SUPERFAMILY "Winged helix" DNA-binding domain 334 414 IPR036390 -
Prci1g3317 448 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 446 IPR016650 GO:0003743|GO:0005737|GO:0005852
Prci1g3317 448 ProSiteProfiles PCI domain profile. 219 414 IPR000717 -
Prci1g3317 448 Pfam PCI domain 285 410 IPR000717 -
Prci1g3317 448 SMART eIF3_N_2 5 137 IPR019010 -
Prci1g3317 448 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 332 427 IPR000717 -
Prci1g3317 448 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Prci1g3317 448 CDD eIF3E 3 440 IPR016650 GO:0003743|GO:0005737|GO:0005852
Prci1g3317 448 PIRSF Transl_init_eIF3e 1 448 IPR016650 GO:0003743|GO:0005737|GO:0005852
Prci1g3317 448 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 440 IPR016650 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3317 Prci-Chr1 50764964 50768244 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3317 3 448 Eukaryotic Initiation Factors Gene Family AT3G57290 83.857 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3317 K03250 - cpap:110807170 813.527