Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3314 ATGACTGAGGAGCGATACCGATCAATGCTTGGGGAACATATTCAAAAATACAAGAGGAGGTATAAAGATACCTCATCTAGTCCTGCCCAAAATCGGGTTAGCGCTCCACTTCTTAAGAGTAACATAGGCTTGAAAGCTCGGAAGTTAGTGAATGAGAACCGAGGAGGAATACATGCTCTGGAGGCTTCGTCAGAGTGGCTGAATGATATTAATCCTCAGAAACCTGTAAACTACCGTGATGCAGAATTCAGACATCAATATGGATCTGATAGAACTATCTATGAACCAGCTTCTTTAGATATTGGAGATGGCACTATTTACAAAATTCCTCCTACTTATGATCAGTTAGCAGCAATGGTGAACCTTCCAAGTTTCTCGGATATCCGAGTCGAGGAATTTTTCCTAAAGGGTACCTTGGATTTGGGATCCTTGGCTGCAATGATGGCTTCTGATAAAAGGGTTGGGACTAGAAACCGAGCTGGCATGGGGGAAACCTTACCTCAATTTGAATCACTTCAGGCACGATTGAAGGCCATGTCAGCTTCTAACTCACCTCATCAATTTAGTCTGAAAGTAACTGATATTGCTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGCGACACATATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGATAAAGAAAGACCCTTCTTTGATTGAGAAGGAGGAAATGGAAAGAATTGGAAAGGTCTGGATAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGTTTTTTACTGCTTTCCATCGAAAGCAACTCGTTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTCAGAATGAAAGTGAGTAGATCACTTAAATTCATGAGGAGTGCACCCATTCGCACCCGAAGACTAGCTAGAGATGTTTTGCTGTTCTGGAAACGAGTGGATAAGGAGATGGCAGAATTGAGGAAAAAAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGACGCGAACAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGACTGAATTTCCTTATACAGCAGACTGAGCTATATAGTCACTTTATGCAGAACAAGTCGAACTTACTGTCCTCTGATGCTTTACCTACAGTAGATGAAAAAGCAGATGATCATGATGCAGAAGTGGGCTCTTCAGATGTTGGGCCTAGTGGGGAGGAAGATCCTGAAGAGGTTGAACTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACTAGTGCTTTTGACAGCGAATGCTTGAAGCTGCGTCAGGTGGGTGAAACTGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCCTCAACAATGCCTGTGGCATCGACAGTTCGGACACCAGAACTGTTTAGGGGCTGTCTTAAGGAATATCAGCTAAAAGGTCTTCAGTGGTTAGTTAATTGTTACGAGCAGGGTCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAGGCCATGGCTTTTTTAGCCCATCTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGATTGTTGCACCTGCATCAGTATTGAACAATTGGAACGAGGAACTTGAGCGCTTCTGCCCTGAAATGAAAGTTCTTCCTTACTGGGGCGGGCTTCATGAGCGGACAGTACTTAGGAAAAGTATCAACCCAAAGGATCTTTATCGTAGGGAAGCAAAATTCCACATTCTCATTACAAGCTACCAGCTTCTAGTATCTGATGAGAAGTATTTTCGACGTGTGAAATGGCAGTACATGGTATTAGATGAAGCCCAGGCAATTAAAAGTTCAACCAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCTTGTTGCTGACTGGTACACCAATTCAAAATAATATGGCAGAATTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGATAGCCATGAGCAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAACATCAACTTAACAGATTGCATTCTATTCTAAAGCCTTTCATGCTGCGACGAGTTAAAAAGGATGTAATATCTGAACTGACTAGGAAAACAGAGGTTACAGTGCACTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATCAAGAATAAAATATCTCTTGCAGGGTTGTTTGATAGCAATCGTGGGCATTTTAATGAGAAGAGACTTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCGGAGTTGTTTGAGAGGAGCGAGGGAACCACATTCTATAACTTTGGGGAGATTCCAAATTCCCTTCCGCCACCTCCATTTGGGGAGTTGGAGGATGTTTACTATTCTGGGGGTCACAATCCCATATCATACGAGATGCCAAAACTTGTCCATCAAGAAATCATGCAAGGTTCTAAATTGCTCAATTCAACTGTTGCTCGTGGTGTTAGCAGAGAATATTTTCAAAGACATTTTAATATTTATAGCCCAGAGAATGTTTTTAAATCTATCTTCTCTGAAGGGAATAAATCAAATGCGTCATGTATTAGAAGTGGAACTTTTGGTTTTGCCCGTTTGATGGATTTGTCCCCACAAGAAGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTATTGTATTCTATGGTGAGATGGGAACGAAAATTTATCAATGAGGTTGTGGACTTCGTGGCAGAGGCTCTGGATAATGATCCTGAATCTGGTTACCTTGAAAGAGGAAAAGTAAGGGCTGTTATGCGAATGTTACTGGTGCCTACAAAATCTGAGACAAATATTTTTCAAAGAAGATTTGCTACTGGCCCTAGCCATGCCCCTTTTGAGGCATTGGTCGTCCCATATCAAGATAGGATTTTATCCAATGCAAGACTTATTCACTCAGCATACACATATATCCCTCGGACTAGAGCTCCCCCAATTGTTGCTCACTGCTCAGATCGAAACTTCTCTTATAAAACACTTGAAGAGTTGCATGACCCTTGGGTTAAGAGATTGCTTGTGGGATTTGCGCGCACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGGTTGATTCTGAAGTACCAGTTGCACAGCCTGCTCTTCAGTTAACCCACAAAATTTTAGGTTCATCTCCCCCTATGCAAAATTTTGACCCTGCAAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGACATATTATTAAAACGCTTGCGGGCTGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACAAAGATGCTGAATATTCTTGAGGACTACATGAATTATAGAAAATATAGATATTTTAGACTTGATGGATCATCGGCTATTCAAGACCGCAGAGACATGGTTAGAGACTTCCAGCACAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGGGCTGGTGGATTGGGTATCAACTTGACGGCTGCTGACACAGTAATCTTTTATGAGAGTGATTGGAATCCTACGTTGGATCAGCAGGCAATGGATAGAGCTCATCGATTGGGTCAAACAAAAGATGTCACTGTTTACAGACTTATATGTGAAGAAACAATTGAAGAGAAGATTCTTCTTAGAGCAGGCCAAAAAAGCACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGATTTTATAGATCCTGATGATGTTGTATCCTTTCTTCTGGATGATGTCCAGTTGGAGCAGAAATTTAAGGACATTCCTCTTCAGATAAAGGATAAGCAAAAGAGGAAACAAACTAGGAAGGGTATACTTGTAAATGAAGAAGGTGACGTGTCCCTGGAAGAGCTAACGAACTCTGGAGCACAGGGCCCAGATAATGATATTTCTCTTGACCCAGAGGGATCAAAGCCCAGTAATAAAAAGTTGCAGAGAAAAGCTGCCCCTGACAAGCAAACCAAATCAAGGGCCAGGAAATTTCAAAAGATGGATGAGCTTAATAGTAGTTCAATGCCGATGGACTATGAGTTGTACGATCCAGCGGTCCAGAAACCCAAGAGACCGAAGAAGGCAAAGAAAGCTGGGAATGACAAGTTTGACGACTCTTCTGCGGGTACAGCTAATGTATTCCCGGAGCTGACCCAATAA 4290 0.417 MTEERYRSMLGEHIQKYKRRYKDTSSSPAQNRVSAPLLKSNIGLKARKLVNENRGGIHALEASSEWLNDINPQKPVNYRDAEFRHQYGSDRTIYEPASLDIGDGTIYKIPPTYDQLAAMVNLPSFSDIRVEEFFLKGTLDLGSLAAMMASDKRVGTRNRAGMGETLPQFESLQARLKAMSASNSPHQFSLKVTDIALNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKIKKDPSLIEKEEMERIGKVWINIVRRDIPKHHRFFTAFHRKQLVDAKRFSENCQREVRMKVSRSLKFMRSAPIRTRRLARDVLLFWKRVDKEMAELRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDALPTVDEKADDHDAEVGSSDVGPSGEEDPEEVELKKEALKAAQEAVSKQRKLTSAFDSECLKLRQVGETETDALSQEVAGASNIDLQTPSTMPVASTVRTPELFRGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPEMKVLPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAGLFDSNRGHFNEKRLLNLMNIVIQLRKVCNHPELFERSEGTTFYNFGEIPNSLPPPPFGELEDVYYSGGHNPISYEMPKLVHQEIMQGSKLLNSTVARGVSREYFQRHFNIYSPENVFKSIFSEGNKSNASCIRSGTFGFARLMDLSPQEVMFSATGSFMEQVLYSMVRWERKFINEVVDFVAEALDNDPESGYLERGKVRAVMRMLLVPTKSETNIFQRRFATGPSHAPFEALVVPYQDRILSNARLIHSAYTYIPRTRAPPIVAHCSDRNFSYKTLEELHDPWVKRLLVGFARTSEFNGPRKPDGPPHHLIQEVDSEVPVAQPALQLTHKILGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSAIQDRRDMVRDFQHRNDVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDQQAMDRAHRLGQTKDVTVYRLICEETIEEKILLRAGQKSTVQNLVMTGGSVGDFIDPDDVVSFLLDDVQLEQKFKDIPLQIKDKQKRKQTRKGILVNEEGDVSLEELTNSGAQGPDNDISLDPEGSKPSNKKLQRKAAPDKQTKSRARKFQKMDELNSSSMPMDYELYDPAVQKPKRPKKAKKAGNDKFDDSSAGTANVFPELTQ 1429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3314 1429 Gene3D - 740 810 IPR027417 -
Prci1g3314 1429 Coils Coil 337 376 - -
Prci1g3314 1429 Pfam SNF2-related domain 517 804 IPR000330 GO:0005524|GO:0140658
Prci1g3314 1429 Gene3D - 499 739 IPR038718 -
Prci1g3314 1429 SMART ultradead3 498 693 IPR014001 -
Prci1g3314 1429 ProSiteProfiles DBINO domain profile. 265 390 IPR020838 GO:0003677
Prci1g3314 1429 Pfam DNA-binding domain 260 389 IPR020838 GO:0003677
Prci1g3314 1429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 730 IPR027417 -
Prci1g3314 1429 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1126 1276 IPR001650 -
Prci1g3314 1429 MobiDBLite consensus disorder prediction 401 425 - -
Prci1g3314 1429 CDD SF2_C_SNF 1114 1246 - -
Prci1g3314 1429 MobiDBLite consensus disorder prediction 1331 1429 - -
Prci1g3314 1429 MobiDBLite consensus disorder prediction 1415 1429 - -
Prci1g3314 1429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 732 1287 IPR027417 -
Prci1g3314 1429 PANTHER HELICASE SRCAP-RELATED 51 442 - -
Prci1g3314 1429 FunFam Putative DNA helicase INO80 474 752 - -
Prci1g3314 1429 MobiDBLite consensus disorder prediction 1352 1377 - -
Prci1g3314 1429 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 514 685 IPR014001 -
Prci1g3314 1429 Gene3D - 1092 1330 IPR027417 -
Prci1g3314 1429 Pfam Helicase conserved C-terminal domain 1126 1235 IPR001650 -
Prci1g3314 1429 SMART helicmild6 1152 1235 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3314 Prci-Chr1 50717154 50728565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3314 523 804 RAD5 or RAD16-like Gene Family AT5G43530 29.358 9.57e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci1g3314 SNF2_N 2.9e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3314 K11665 - gmx:100780615 2257.26