Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3312 ATGGATCACAGAAGGCAATCCAAGGACTCGCTCTCTTACTCCAGTCTTTTCAATCTCGAGTCTTTGATGAATTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTGGGGCAATCGCAAATTACAGCAATGGGAGTACGCGTGGAAGGGAGGTAAATTTGTTAAAGAAGAGGAAGTGGTCTCAAAACAGTGACGGCGAAGACAAGGGTAATTTTTGTGGAACACACATGACTGAGGAGCGATACCGATCAATGCTTGGGGAACATATTCAAAAATACAAGAGGAGGTATAAAGATACCTCATCTAGTCCTGCCCAAAATCGGGTTAGCGCTCCACTTCTTAAGAGTAACATAGGCTTGAAAGCTCGGAAGTTAGTGAATGAGAACCGAGGAGGAATACATGCTCTGGAGGCTTCGTCAGAGTGGCTGAATGATATTAATCCTCAGAAACCTGTAAACTACCGTGATGCAGAATTCAGACATCAATATGGATCTGATAGAACTATCTATGAACCAGCTTCTTTAGATATTGGAGATGGCACTATTTACAAAATTCCTCCTACTTATGATCAGTTAGCAGCAATGGTGAACCTTCCAAGTTTCTCGGATATCCGAGTCGAGGAATTTTTCCTAAAGGGTACCTTGGATTTGGGATCCTTGGCTGCAATGATGGCTTCTGATAAAAGGGTTGGGACTAGAAACCGAGCTGGCATGGGGGAAACCTTACCTCAATTTGAATCACTTCAGGCACGATTGAAGGCCATGTCAGCTTCTAACTCACCTCATCAATTTAGTCTGAAAGTAACTGATATTGCTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGCGACACATATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGATAAAGAAAGACCCTTCTTTGATTGAGAAGGAGGAAATGGAAAGAATTGGAAAGGTCTGGATAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGTTTTTTACTGCTTTCCATCGAAAGCAACTCGTTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTCAGAATGAAAGTGAGTAGATCACTTAAATTCATGAGGAGTGCACCCATTCGCACCCGAAGACTAGCTAGAGATGTTTTGCTGTTCTGGAAACGAGTGGATAAGGAGATGGCAGAATTGAGGAAAAAAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGACGCGAACAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGACTGAATTTCCTTATACAGCAGACTGAGCTATATAGTCACTTTATGCAGAACAAGTCGAACTTACTGTCCTCTGATGCTTTACCTACAGTAGATGAAAAAGCAGATGATCATGATGCAGAAGTGGGCTCTTCAGATGTTGGGCCTAGTGGGGAGGAAGATCCTGAAGAGGTTGAACTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACTAGTGCTTTTGACAGCGAATGCTTGAAGCTGCGTCAGGTGGGTGAAACTGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCCTCAACAATGCCTGTGGCATCGACAGTTCGGACACCAGAACTGTTTAGGGGCTGTCTTAAGGAATATCAGCTAAAAGGTCTTCAGTGGTTAGTTAATTGTTACGAGCAGGGTCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAGGCCATGGCTTTTTTAGCCCATCTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGATTGTTGCACCTGCATCAGTATTGAACAATTGGAACGAGGAACTTGAGCGCTTCTGCCCTGAAATGAAAGTTCTTCCTTACTGGGGCGGGCTTCATGAGCGGACAGTACTTAGGAAAAGTATCAACCCAAAGGATCTTTATCGTAGGGAAGCAAAATTCCACATTCTCATTACAAGCTACCAGCTTCTAGTATCTGATGAGAAGTATTTTCGACGTGTGAAATGGCAGTACATGGTATTAGATGAAGCCCAGGCAATTAAAAGTTCAACCAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCTTGTTGCTGACTGGTACACCAATTCAAAATAATATGGCAGAATTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGATAGCCATGAGCAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAACATCAACTTAACAGATTGCATTCTATTCTAAAGCCTTTCATGCTGCGACGAGTTAAAAAGGATGTAATATCTGAACTGACTAGGAAAACAGAGGTTACAGTGCACTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATCAAGAATAAAATATCTCTTGCAGGGTTGTTTGATAGCAATCGTGGGCATTTTAATGAGAAGAGACTTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCGGAGTTGTTTGAGAGGAGCGAGGGAACCACATTCTATAACTTTGGGGAGATTCCAAATTCCCTTCCGCCACCTCCATTTGGGGAGTTGGAGGATGTTTACTATTCTGGGGGTCACAATCCCATATCATACGAGATGCCAAAACTTGTCCATCAAGAAATCATGCAAGGTTCTAAATTGCTCAATTCAACTGTTGCTCGTGGTGTTAGCAGAGAATATTTTCAAAGACATTTTAATATTTATAGCCCAGAGAATGTTTTTAAATCTATCTTCTCTGAAGGGAATAAATCAAATGCGTCATGTATTAGAAGTGGAACTTTTGGTTTTGCCCGTTTGATGGATTTGTCCCCACAAGAAGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTATTGTATTCTATGGTGAGATGGGAACGAAAATTTATCAATGAGGTTGTGGACTTCGTGGCAGAGGCTCTGGATAATGATCCTGAATCTGGTTACCTTGAAAGAGGAAAAGTAAGGGCTGTTATGCGAATGTTACTGGTGCCTACAAAATCTGAGACAAATATTTTTCAAAGAAGATTTGCTACTGGCCCTAGCCATGCCCCTTTTGAGGCATTGGTCGTCCCATATCAAGATAGGATTTTATCCAATGCAAGACTTATTCACTCAGCATACACATATATCCCTCGGACTAGAGCTCCCCCAATTGTTGCTCACTGCTCAGATCGAAACTTCTCTTATAAAACACTTGAAGAGTTGCATGACCCTTGGGTTAAGAGATTGCTTGTGGGATTTGCGCGCACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGGTTGATTCTGAAGTACCAGTTGCACAGCCTGCTCTTCAGTTAACCCACAAAATTTTAGGTTCATCTCCCCCTATGCAAAATTTTGACCCTGCAAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGACATATTATTAAAACGCTTGCGGGCTGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACAAAGATGCTGAATATTCTTGAGGACTACATGAATTATAGAAAATATAGATATTTTAGACTTGATGGATCATCGGCTATTCAAGACCGCAGAGACATGGTTAGAGACTTCCAGCACAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGGGCTGGTGGATTGGGTATCAACTTGACGGCTGCTGACACAGTAATCTTTTATGAGAGTGATTGGAATCCTACGTTGGATCAGCAGGCAATGGATAGAGCTCATCGATTGGGTCAAACAAAAGATGTCACTGTTTACAGACTTATATGTGAAGAAACAATTGAAGAGAAGATTCTTCTTAGAGCAGGCCAAAAAAGCACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGATTTTATAGATCCTGATGATGTTGTATCCTTTCTTCTGGATGATGTCCAGTTGGAGCAGAAATTTAAGGACATTCCTCTTCAGATAAAGGATAAGCAAAAGAGGAAACAAACTAGGAAGGGTATACTTGTAAATGAAGAAGGTGACGTGTCCCTGGAAGAGCTAACGAACTCTGGAGCACAGGGCCCAGATAATGATATTTCTCTTGACCCAGAGGGATCAAAGCCCAGTAATAAAAAGAGAAAAGCTGCCCCTGACAAGCAAACCAAATCAAGGGCCAGGAAATTTCAAAAGATGGATGAGCTTAATAGTAGTTCAATGCCGATGGACTATGAGTTGTACGATCCAGCGGTCCAGAAACCCAAGAGACCGAAGAAGGCAAAGAAAGCTGGGAATGACAAGTTTGACGACTCTTCTGCGGGTACAGCTAATGTATTCCCGGAGCTGACCCAATAA 4554 0.4174 MDHRRQSKDSLSYSSLFNLESLMNFQLPQQDDDFDYYGNSSQDESRDSQGGAIANYSNGSTRGREVNLLKKRKWSQNSDGEDKGNFCGTHMTEERYRSMLGEHIQKYKRRYKDTSSSPAQNRVSAPLLKSNIGLKARKLVNENRGGIHALEASSEWLNDINPQKPVNYRDAEFRHQYGSDRTIYEPASLDIGDGTIYKIPPTYDQLAAMVNLPSFSDIRVEEFFLKGTLDLGSLAAMMASDKRVGTRNRAGMGETLPQFESLQARLKAMSASNSPHQFSLKVTDIALNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKIKKDPSLIEKEEMERIGKVWINIVRRDIPKHHRFFTAFHRKQLVDAKRFSENCQREVRMKVSRSLKFMRSAPIRTRRLARDVLLFWKRVDKEMAELRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDALPTVDEKADDHDAEVGSSDVGPSGEEDPEEVELKKEALKAAQEAVSKQRKLTSAFDSECLKLRQVGETETDALSQEVAGASNIDLQTPSTMPVASTVRTPELFRGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPEMKVLPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAGLFDSNRGHFNEKRLLNLMNIVIQLRKVCNHPELFERSEGTTFYNFGEIPNSLPPPPFGELEDVYYSGGHNPISYEMPKLVHQEIMQGSKLLNSTVARGVSREYFQRHFNIYSPENVFKSIFSEGNKSNASCIRSGTFGFARLMDLSPQEVMFSATGSFMEQVLYSMVRWERKFINEVVDFVAEALDNDPESGYLERGKVRAVMRMLLVPTKSETNIFQRRFATGPSHAPFEALVVPYQDRILSNARLIHSAYTYIPRTRAPPIVAHCSDRNFSYKTLEELHDPWVKRLLVGFARTSEFNGPRKPDGPPHHLIQEVDSEVPVAQPALQLTHKILGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSAIQDRRDMVRDFQHRNDVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDQQAMDRAHRLGQTKDVTVYRLICEETIEEKILLRAGQKSTVQNLVMTGGSVGDFIDPDDVVSFLLDDVQLEQKFKDIPLQIKDKQKRKQTRKGILVNEEGDVSLEELTNSGAQGPDNDISLDPEGSKPSNKKRKAAPDKQTKSRARKFQKMDELNSSSMPMDYELYDPAVQKPKRPKKAKKAGNDKFDDSSAGTANVFPELTQ 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3312 1517 Gene3D - 830 900 IPR027417 -
Prci1g3312 1517 SMART helicmild6 1242 1325 IPR001650 -
Prci1g3312 1517 Pfam Helicase conserved C-terminal domain 1216 1325 IPR001650 -
Prci1g3312 1517 Gene3D - 1182 1420 IPR027417 -
Prci1g3312 1517 PANTHER HELICASE SRCAP-RELATED 91 532 - -
Prci1g3312 1517 Pfam SNF2-related domain 607 894 IPR000330 GO:0005524|GO:0140658
Prci1g3312 1517 FunFam Putative DNA helicase INO80 564 842 - -
Prci1g3312 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 820 IPR027417 -
Prci1g3312 1517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 775 IPR014001 -
Prci1g3312 1517 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1216 1366 IPR001650 -
Prci1g3312 1517 CDD SF2_C_SNF 1204 1336 - -
Prci1g3312 1517 MobiDBLite consensus disorder prediction 1439 1465 - -
Prci1g3312 1517 Pfam DNA-binding domain 350 479 IPR020838 GO:0003677
Prci1g3312 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 822 1377 IPR027417 -
Prci1g3312 1517 MobiDBLite consensus disorder prediction 1503 1517 - -
Prci1g3312 1517 MobiDBLite consensus disorder prediction 1421 1517 - -
Prci1g3312 1517 MobiDBLite consensus disorder prediction 491 515 - -
Prci1g3312 1517 Gene3D - 589 829 IPR038718 -
Prci1g3312 1517 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Prci1g3312 1517 SMART ultradead3 588 783 IPR014001 -
Prci1g3312 1517 MobiDBLite consensus disorder prediction 33 60 - -
Prci1g3312 1517 Coils Coil 427 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3312 Prci-Chr1 50717154 50728566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3312 613 894 RAD5 or RAD16-like Gene Family AT5G43530 29.358 1.05e-26 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci1g3312 SNF2_N 3.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3312 K11665 - gmx:100780615 2401.32