Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3299 ATGGGCACTGCGAGGAGGCAATTAAAGGTCATGCTATGGAAGAACTGGCTTCTCAAAATTCGTCATCCGTTTGCAACAAGCGCTGAGGTTTTGCTCCCAACTTTAGTGATGTTGCTGTTAATAGCTGTAAGGACTCGGGTTGATACGCAAATTCATCCCGCACAACCGCATATCCGAGAAGGGATGTATGTAGAAGTGGGCAGGGGTATTTCTCCTAGCTTCCAACAAGTATTGGAAGTTTTGTCGGCAAAGAGAGAGTATTTAGCTTTTGCCCCTAATACAACAGAAACTGAGCAAATGATAGACATAATGTCAATAAAATTTCCCCTCTTGAAGCTTGTCAGTAAAATATACAAAGATGAGGCAGAGCTGGAGACTTACATACGCTCAGACATTTATGGTACCAGCAATCAGGCAAGGAATTGTTCATATCCAAAAATCAAAGGAGCAGTGGTATTCCATGAACAAGGTCCTAAGTCATTTGATTACAGCATACGCCTCAATCACACATGGGCTTTCTCTGGTTTTCCTGATGTTAAGACCATTATGGATACAAATGGTCCTTTTGTCCATGACTTGGAACTTGGTGTTAGTGCAATACCAACAATGCAGTACAGCTTCAGTGGGTTTTTGACTCTCCAACAAGTTGTTGATTCATTTATAATATTCATGGCTCAGCAGTCTGACATAACCCCTAGCACTGGAAGTGTAGAGCATCCTCTGCCACGCTCCAATGATACTGATTTTTCTTTCAAAATTCCTTGGACTCAGTTTAGCCCTGCACACATACGATTGGCTCCATTTCCCACTCGAGAGTACACTGATGATCAGTTCCAGTATGTGAAGAATTTCATGGGGATTTTGTACTTATTGGGATTTCTGTATCCAATTTCTCGACTGATCAGTTATTCTGTGTTTGAGAAGGAGCAGAAAATTAAGGAAGGGCTCTACATGATGGGCCTGAAAGATGGTGTGTTCCATCTCTCATGGTTTATAACATATTCTTTGCAGTTTGCAATCTCTTCTGGAATCATCACAGCTTGCACAATGGACAATTTATTCAAGTATAGCGATAAGACACTGGTGTTTGCGTACTTCTTCCTTTTTGGGCTTAGTGCAATTATGTTGTCATTTTTGATATCAACATTTTTCAAACGGGCCAAAACAGCTGTAGCAGTTGGAACCCTTTCTTTCCTTGGTGGTTTTTTCCCTTATTACACTGTGTATGATGAGGCAGTCTCTATTGTCTTGAAGATTATTGCTTCTTTGCTCTCACCCACGGCTTTTGCTCTGGGGTCTATCAATTTTGCTGATTATGAGCGTGCTCATGTTGGACTTCGTTGGAGCAACATATGGCGGGATTCATCTGGAGTAAATTTTTTGTTCTGTTTTCTGATGATGCTTATTGAACTGCTGTATTGTGCGATTGGTCTTTATCTTGATAAGGTTCTTCCAAGGGAGTATGGATCACAATATTCATGGAACTTTATTTTCCAAAAAGGCTTTTGGAGGGAGAAACAAGTTGTAAAACATTGTTCCTCCAGTTCAGACATAGAAATTGCTGATAGGATTCCCAAGTCAAAAGAAAAATTTCCAGTGGTAAATGCTTTCAAACCTGCTATAGAAGCAATAAGTTTGGACATGAAACAACAGGAGCTGGATGGCAGGTGCATTAAAATTAGGGATTTGCATAAACTGTATACTTCTAAAAAGGGGGCTTGCTGCGCTGTTAACTCATTACGACTTACGTTGTATGAAAATCAAATTCTTGCTCTTCTAGGGCACAATGGAGCTGGAAAAAGCACAACAATCTCAATGCTCGTTGGTCTTCTTCCTCCTACTTCAGGGGATGCTTTGGTGTTAGGAAATAATATTTTAACTGATATTGATGAGATACGGAAGGTTTTAGGCGTCTGCCCTCAAAATGACATACTTTTTCCCGAATTGACTGTAAGAGAGCATCTTGAAATATTTGCGGTATTAAAGGGTGTAGAGGAAGACACTTTGAAGGATGTTGTTTCCAATATGGTAGATGAGGTAGGTTTAGCTGATAAAATTAACACTCTAGTGGGAGCTCTTTCTGGTGGCATGAAGAGGAAACTGTCTCTTGGAATTGCATTGATAGGAAACAGCAAGGTTATAGTTCTTGATGAGCCTACTAGTGGAATGGACCCATACTCAATGCGCTTGACTTGGCAGTTAATTAAAAAAATAAAAAAAGGAAGGATAATATTACTGACAACACATTCTATGGATGAAGCCGATGAACTAGGTGATCGGATAGCTATCATGGCCAATGGTTCTTTGAAATGCTGTGGAAGTTCCCTTTTCTTGAAGCACCACTATGGTGTTGGTTATACTTTAACTCTTGTGAAGTCTGCAGCCACTGCTTCAGTAGCTTCTGATATTGTCAAACGTCATGTTCCATCAGCTACTTGTGTGAGTGAGGTGGGAACTGAGATTTCCTTCAGGCTTCCTCTCCTGTCCTCATCAGCCTTTGAGAGCATGTTCCGGGAAATTGAAATTTGCTTGAGAAAATCAGTTTCTAACTTGAAATCCACTGATCATGATGGAAAAGAAAGTCTTGGTATTGAAAGCTATGGTATATCTGTCACAACCCTGGAGGAGGTATTCCTGCGAGTTGCAGGATCAGACTATGATGAAGTTGAATGTTTTGAGGAGAAAAAGTGTCCCTTCATATCAGATTCTTTGCCTTCTCATGCTTCTTATGATCATTCATCCAAAAACAGATGGCTTTTTGAATTTCTTGGAGATTACAGGAAGATCAGTGGATTCATATCTAGCACAGTAGCAAGAGCTTGTTATCTATTCTTTGCTACGGTGTCAAGTTTCATAAACTTCTTGAGTATGCTGTGTTGCAGCTGTTGTGTCATTACCAGGTCCACGTTTTGGCAGCATTCTAAGGCTTTACTCATTAAGAGAGCAATATCTGCTCGCAGGGATCATAAAACTATTGTTTTCCAGCTTCTGATTCCTGCTGTCTTCTTATTTATTGGCCTTCTGTTTCTCAAGCTTAAGCCACATCCTGATCAGCAGTCCTTGACCCTTACAACATCTTACTTTAATCCTTTGCTGAGTGGAGGTGGTGGGGGAGGTCCAATTCCTTTTAATTTCTCTTTTCCAATTGCTGAAGAGGTAGCCAATTGTGTCAAAGGAGGGTGGATTCAAAGGGCCAAACCTACTGTATACAAATTCCCTAATCCAGAGAAGTCATTACATGAAGCAGTGGAAGTAGCAGGGCCAATTCTTGGACCTGCTTTACTTTCGATGAGTGAATATTTGATGTCTAGCTTTAACGAATCCTACCAGTCTAGGTATGGGGCAATTTTAATGGATGAGCAGTACAAAGATGGAGGCTTAGGCTACACTGTTCTACACAACTGTTCTTGTCAGCATTCTGGTCCAACCTTTATCAATTTGATGAATGCGGCAATTCTTAGGCTTGCTACTCGTGACATGAATATGACAATTCAGACACGTAACCACCCTCTGCCAATGACACAAAGCCAGCTCTTACAACATCATGATCTGGACGCTTTTTCTGCTGCAATAATTGTCAATATTGCCTTCTCTTTTATACCCGCCTCATTTGCTGTTTCCATTGTAAAGGAACGGGAAGTTAAAGCTAAGCACCAACAACTAATCAGTGGGGTTTCTATTTTTTCATATTGGGCTTCTACATTTATATGGGACTTTGTGAGCTTCTTGTTTCCTACCTCCTTTGCAGTTGTTCTCTTTTACATCTTTGGTCTGGATCAGTTTGTTGGAGGTCCTTCTTTGCTGCCAACAGTCCTCATGTTTTTGGAATATGGACTGGCAATTGCATCATCAACGTACTGCCTTACATTTTTCTTTTCTGACCATACCATGGCTCAGAATGTGGTTCTCCTGGTCCACTTCTTCACTGGTCTAGTACTAATGGTTATTTCATTCATTATGGGACTGATACCATCAACGACAAGTGCCAATTCTTTTCTTAAGAACTTCTTCAGATTATCTCCTGGATTTTGTTTTGCTGATGGGTTTGCTTCACTAGCTCTTCTACGGCAAGGGATGAAAGATAAAACAAGTGAAGGGGTGTTTGATTGGAATGTTACTGGTGCTTCTATCTGTTATCTTGCTCTGGAGAGCATCAGTTACTTTGTGTTAACACTTGGAATTGAAGTTTTTCCTTCTCTCAAATTGACTCTGTTCATGATCAAAAAGTGGTGGGAAAATATTGTCCCACGTAATACTCCTTCTTATCTGGAAAACCTATTAGAACCTTCCCTGGAAACTGTTGGCATAGACTGTGATGAAGATGTAGATGTGAAAACAGAAAGAAACAGAGTAATGTCAGGTACCCTTGACAATGCCATCATCTATCTGCGTAATCTTCGTAAGGTCTATTATGAAGGGAAGCTTCGCCAGCAAAAGGTAGCAGTAGATTCATTAACCTTTGCTGTTCAGGAAGGAGAATGCTTCGGATTTTTAGGGACAAATGGAGCTGGAAAGACCACAACTTTGTCCATGTTGTGTGGAGAAGAGTCTCCATCTGATGGGACTGCTTTTATTTTTGGCAAGGATATATGTTCTCATCCCAAGGCTGCTCGCCAGCATATTGGTTATTGCCCACAATTTGATGCTCTCTTGGAATATTTGACTGTACAAGAACATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCAAGTTGCATAATAGATGATGTTGTTTTGGAAAAGTTAGAGGAGTTTGACTTGCTGAAGCATGCTAATAAGCCATCATTTTCTCTTAGTGGAGGAAATAAAAGAAAATTGTCTGTTGCAATTGCGATGATTGGAAATCCTCCTATAGTCATTCTTGATGAGCCATCCACGGGTATGGATCCCATTGCCAAACGATTCATGTGGGATGTAATATCTAGGATCTCAACAAGACGAGGAAAGACAGCAGTAATTCTAACTACCCATAGCATGAATGAAGCTCAAGCATTGTGTACGCGAATAGGAATAATGGTTGCTGGCCGATTAAGATGCATCGGAAGTCCACAGCACTTGAAAACAAGATATGGGAATCATCTGGAATTAGAGGTGAAACCTACCGAAGTGAGCTCTGAAGACCTAGAAATACTCTGTAAAGCTATACGAGAAAGGCTTTTTGATGTTCCATCTCATCCAAGAAGCTTACTTGATGGCCTTGAAATTTGCATTGGAGGCGCTGACTCCATTTCATCAGATGCTTCTTTTGCAGAAATTAGCTTGTCACAGGAAATGATTGTCTTCATTGGACGCTGGCTTGGCAATGAAGAAAGAATAAAGACGCTTATCTCTTACGCACCTGTATCTGATGGGGCTTCTAGCGAACTGTTATCTGAACAACTGTTTCGAGATGGTGGTATTCCGTTGCCGGTATTTTCTGAGTGGTGGCTGTCCAAAGAAAAGTTCTCGGCAATAGATTCATTTATTCTATCTTCTTTTCCTGAAGCAAGGTGTCAAGGGTGCAATGGTTTGAGTATGAGATACCAGTTACCATATGGTGAAGACTTTTCTCTTGCGGATGTTTTCGGACTTATTGAAGGAAACAGAAATAGACTGGGCATTGCAGAGTACAGCATTAGCCAGTCAACCCTGGAGACCATATTTAATCATTTTGCAGCTAGCTCATGA 5667 0.4067 MGTARRQLKVMLWKNWLLKIRHPFATSAEVLLPTLVMLLLIAVRTRVDTQIHPAQPHIREGMYVEVGRGISPSFQQVLEVLSAKREYLAFAPNTTETEQMIDIMSIKFPLLKLVSKIYKDEAELETYIRSDIYGTSNQARNCSYPKIKGAVVFHEQGPKSFDYSIRLNHTWAFSGFPDVKTIMDTNGPFVHDLELGVSAIPTMQYSFSGFLTLQQVVDSFIIFMAQQSDITPSTGSVEHPLPRSNDTDFSFKIPWTQFSPAHIRLAPFPTREYTDDQFQSXVKNFMGILYLLGFLYPISRLISYSVFEKEQKIKEGLYMMGLKDGVFHLSWFITYSLQFAISSGIITACTMDNLFKYSDKTLVFAYFFLFGLSAIMLSFLISTFFKRAKTAVAVGTLSFLGGFFPYYTVYDEAVSIVLKIIASLLSPTAFALGSINFADYERAHVGLRWSNIWRDSSGVNFLFCFLMMLIDXLLYCAIGLYLDKVLPREYGSQYSWNFIFQKGFWREKQVVKHCSSSSDIEIADRIPKSKEKFPVVNAFKPAIEAISLDMKQQELDGRCIKIRDLHKLYTSKKGACCAVNSLRLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVLGNNILTDIDEIRKVLGVCPQNDILFPELTVREHLEIFAVLKGVEEDTLKDVVSNMVDEVGLADKINTLVGALSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAATASVASDIVKRHVPSATCVSEVGTEISFRLPLLSSSAFESMFREIEICLRKSVSNLKSTDHDGKESLGIESYGISVTTLEEVFLRVAGSDYDEVECFEEKKCPFISDSLPSHASYDHSSKNRWLFEFLGDYRKISGFISSTVARACYLFFATVSSFINFLSMLCCSCCVITRSTFWQHSKALLIKRAISARRDHKTIVFQLLIPAVFLFIGLLFLKLKPHPDQQSLTLTTSYFNPLLSGGGGGGPIPFNFSFPIAEEVANCVKGGWIQRAKPTVYKFPNPEKSLHEAVEVAGPILGPALLSMSEYLMSSFNESYQSRYGAILMDEQYKDGGLGYTVLHNCSCQHSGPTFINLMNAAILRLATRDMNMTIQTRNHPLPMTQSQLLQHHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSIFSYWASTFIWDFVSFLFPTSFAVVLFYIFGLDQFVGGPSLLPTVLMFLEYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLVLMVISFIMGLIPSTTSANSFLKNFFRLSPGFCFADGFASLALLRQGMKDKTSEGVFDWNVTGASICYLALESISYFVLTLGIEVFPSLKLTLFMIKKWWENIVPRNTPSYLENLLEPSLETVGIDCDEDVDVKTERNRVMSGTLDNAIIYLRNLRKVYYEGKLRQQKVAVDSLTFAVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARQHIGYCPQFDALLEYLTVQEHLELYARIKGVPSCIIDDVVLEKLEEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGNPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVAGRLRCIGSPQHLKTRYGNHLELEVKPTEVSSEDLEILCKAIRERLFDVPSHPRSLLDGLEICIGGADSISSDASFAEISLSQEMIVFIGRWLGNEERIKTLISYAPVSDGASSELLSEQLFRDGGIPLPVFSEWWLSKEKFSAIDSFILSSFPEARCQGCNGLSMRYQLPYGEDFSLADVFGLIEGNRNRLGIAEYSISQSTLETIFNHFAASS 1890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3299 1890 Pfam ABC-2 family transporter protein 230 480 IPR013525 GO:0016020|GO:0140359
Prci1g3299 1890 Pfam ABC-2 family transporter protein 992 1394 IPR013525 GO:0016020|GO:0140359
Prci1g3299 1890 SMART AAA_5 588 770 IPR003593 GO:0016887
Prci1g3299 1890 SMART AAA_5 1493 1680 IPR003593 GO:0016887
Prci1g3299 1890 CDD ABC_subfamily_A 1463 1689 - -
Prci1g3299 1890 CDD ABC_subfamily_A 560 781 - -
Prci1g3299 1890 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 560 793 IPR003439 GO:0005524
Prci1g3299 1890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1462 1692 IPR027417 -
Prci1g3299 1890 Gene3D - 1453 1705 IPR027417 -
Prci1g3299 1890 Gene3D - 547 800 IPR027417 -
Prci1g3299 1890 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1463 1701 IPR003439 GO:0005524
Prci1g3299 1890 FunFam ABC transporter A family member 1 1452 1706 - -
Prci1g3299 1890 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1099 1400 IPR026082 GO:0016020|GO:0055085|GO:0140359
Prci1g3299 1890 FunFam ATP-binding cassette sub-family A member 12 552 798 - -
Prci1g3299 1890 Pfam ABC transporter 1485 1627 IPR003439 GO:0005524
Prci1g3299 1890 ProSitePatterns ABC transporters family signature. 695 709 IPR017871 GO:0005524|GO:0016887
Prci1g3299 1890 ProSitePatterns ABC transporters family signature. 1600 1614 IPR017871 GO:0005524|GO:0016887
Prci1g3299 1890 Pfam ABC transporter 580 723 IPR003439 GO:0005524
Prci1g3299 1890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 779 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3299 Prci-Chr1 50566831 50605688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3299 579 826 Calmodulin-binding Proteins AT2G36910 26.820 6.39e-17 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3299 K05643 - gmx:100803263 3078.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3299 1 50566831 50605688 Prci1g3299 1 50566831 50605688 ECH