Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3298 ATGGCTTCTTCTTCCTCTGACCCTAGCAAGTCTGAAGTCGGCTGCGGCGGCGGTAATGCAGAGGTTTCGGATGCAGCGGTGGCAAATGATAAGCTCTTACTCTATAGGGGATTGAAGAAAGCGAAGAAAGAAAGAGGGTGTACAGCTAAAGAGCGCATCAGCAAGATGCCTCCTTGCGCTGCGGGGAAACGCAGCTCCATATATCGTGGTGTCACCAGGCATAGGTGGACTGGTCGTTATGAGGCCCATCTTTGGGATAAAAGTACATGGAACCAGAATCAGAATAAAAAGGGAAAACAAGTCTACTTGGGTGCATATGATGACGAGGAGGCTGCAGCTAGAGCTTATGACCTCGCTGCTCTGAAATACTGGGGTCCAGGGACTCTAATCAACTTTCCAGTGACTGATTATGCAAGGGATCTTGAAGAAATGCAAAGTGTTTCAAGAGAGGAATACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCTAGAGGAATCTCTAAATATCGTGGACTCTCCAGCCGATGGGAGCCATCGTATGGTCGGATGGCTGGGTCTGATTACTTCAACAGTATGTATTGTGCTACAGGTGATGATTCAGCAGCAGAAAGCGAATATGTTAGTAGTTTCTGCATAGATCGAAAGATTGATTTAACAAATTACATCAGGTGGTGGGGATCCAATAAAAGCCGCCAACCTGATGCTGGAACAAAATCATCAGAAGAAAAAAAGCAAGGATTTGCTGGAGATGTTTGTGGTGAGCTTAAAACGCTGGAACAGGAAATCCAACCCACTGAGCCATACCAAATGCCACAGTTAGGCTTGCCCCATGATAGGAAAAGGCACAAAAGTTCTGCAGTCTCTGCCTTAAGTATTTTATCACGGTCAGCAGCCTACAAGAGCCAGCAAGAGAAGGCGTTAAAGAGACAAGAAAATTACACAGATAATGATGAGGATGAGAACAAAAATACTATCAACAAGCTGGATCATGGCAAGGCACTTGAGAAATCACCAAATCATAACGGTGGGGATGAAAGACTTGACATTGCAATAGGAGTGAGTGGAGCATTGTCTATTCAAAGAAATGTGTACCCATTGACTTCGTTCTTGTCTGCACCACTTTTGACAGCCTATAATACTGCCGATCCCTTGGTAGATCCTGTTCTATGGACATCTCTTGTTCCTATACTTCCTGGTGGTCTTTCTCAGACAGCCGAGGTTACCAAGACTGAGAGCAGTTCAACTTACACCATGTTTCCGCCAGAGGAATGA 1275 0.4533 MASSSSDPSKSEVGCGGGNAEVSDAAVANDKLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYARDLEEMQSVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSYGRMAGSDYFNSMYCATGDDSAAESEYVSSFCIDRKIDLTNYIRWWGSNKSRQPDAGTKSSEEKKQGFAGDVCGELKTLEQEIQPTEPYQMPQLGLPHDRKRHKSSAVSALSILSRSAAYKSQQEKALKRQENYTDNDEDENKNTINKLDHGKALEKSPNHNGGDERLDIAIGVSGALSIQRNVYPLTSFLSAPLLTAYNTADPLVDPVLWTSLVPILPGGLSQTAEVTKTESSSTYTMFPPEE 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3298 424 ProSiteProfiles AP2/ERF domain profile. 67 133 IPR001471 GO:0003700|GO:0006355
Prci1g3298 424 MobiDBLite consensus disorder prediction 1 21 - -
Prci1g3298 424 MobiDBLite consensus disorder prediction 262 282 - -
Prci1g3298 424 SMART rav1_2 67 139 IPR001471 GO:0003700|GO:0006355
Prci1g3298 424 Gene3D AP2/ERF domain 67 135 IPR036955 GO:0003700|GO:0006355
Prci1g3298 424 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Prci1g3298 424 PRINTS Ethylene responsive element binding protein signature 115 135 IPR001471 GO:0003700|GO:0006355
Prci1g3298 424 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 30 302 - -
Prci1g3298 424 Pfam AP2 domain 67 125 IPR001471 GO:0003700|GO:0006355
Prci1g3298 424 SUPERFAMILY DNA-binding domain 66 134 IPR016177 GO:0003677
Prci1g3298 424 MobiDBLite consensus disorder prediction 302 343 - -
Prci1g3298 424 FunFam AP2-like ethylene-responsive transcription factor 66 135 - -
Prci1g3298 424 MobiDBLite consensus disorder prediction 303 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3298 Prci-Chr1 50553375 50559365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3298 26 408 AP2-EREBP Transcription Factor Family AT2G41710 65.385 8.10e-165 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci1g3298 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3298 K09285 - qsa:O6P43_010133 708.368