Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3276 ATGGGAACTCCCGAATTCCCGGATCTTGGAAAGCATTGCGCTGTTGATGATTGCAAGTTGATTGATTTCTTGCCCTTCACGTGCGATCGTTGCAATCAGGTATATTGTTTGGAGCACAGAGGTTATATTAAACATCAATGTCAGAAAGCGGACGGACTGGATGTCACTGTTGTCATATGTCCACTTTGTGCAAAAGGAGTCCGCCTAATTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAATACTGACTGTGACCCATCAAATTATGAAAGAACCATGAAGAAGAAAAAATGCCCCGCCCCTGGATGCAGAGAGGTCTTGGTATTCTCAAACACAATCAAATGCAGGGATTGCTTGGCAGATCATTGTCTGAGGCATCGTTTTGGCCCTGATCACAAGTGTCCCGGACCCAAAAGTTTGGAAACGAGCTTTTCATTTAAGAATCTCTTGAGCAGAAGTACAAAAGAGGTGTCAAAGCCAAATCCATCTCCACTTACATCTTCGTCAAAATGGGCATCAGGCTTTCGCAACGTGGCTTCAAATATTCGAGCTTCTGCTGAAGCCAGTATGTCAAAATTGGGCAATGAAATTAACCAAGCTTGGCAAACAGCAAAGGATGGGATGGGACAGAACAGTGGCATGGGTAATGGAAATGGGCAAGTGGAGATGGAGCAATGTCCCCAGTGTAATGCAAGGTTTTCCTCTGTCACTTATTTGGTGGATCATGTGCAGAAAGTTCATGAAAGGAGCAGCAGCCGATCCAGGGGCGCGCCTAAAGTGACCATAGATGTCTGTCCCAAGTGCAGCAGAGGATTTCGAGATCCAGTGGCTCTTGTAGAGCACGTTGAGAGGGATCACGGTGGTAGTTCAAGAGCCTAG 888 0.4583 MGTPEFPDLGKHCAVDDCKLIDFLPFTCDRCNQVYCLEHRGYIKHQCQKADGLDVTVVICPLCAKGVRLIPDQDPNITWENHVNTDCDPSNYERTMKKKKCPAPGCREVLVFSNTIKCRDCLADHCLRHRFGPDHKCPGPKSLETSFSFKNLLSRSTKEVSKPNPSPLTSSSKWASGFRNVASNIRASAEASMSKLGNEINQAWQTAKDGMGQNSGMGNGNGQVEMEQCPQCNARFSSVTYLVDHVQKVHERSSSRSRGAPKVTIDVCPKCSRGFRDPVALVEHVERDHGGSSRA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3276 295 SMART c2h2final6 266 289 IPR013087 -
Prci1g3276 295 SMART c2h2final6 227 250 IPR013087 -
Prci1g3276 295 Gene3D - 81 157 IPR035896 -
Prci1g3276 295 SUPERFAMILY AN1-like Zinc finger 21 140 IPR035896 -
Prci1g3276 295 ProSitePatterns Zinc finger C2H2 type domain signature. 268 289 IPR013087 -
Prci1g3276 295 ProSitePatterns Zinc finger C2H2 type domain signature. 229 250 IPR013087 -
Prci1g3276 295 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Prci1g3276 295 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Prci1g3276 295 Gene3D Classic Zinc Finger 191 292 - -
Prci1g3276 295 Pfam C2H2-type zinc finger 228 250 - -
Prci1g3276 295 Pfam AN1-like Zinc finger 13 50 IPR000058 GO:0008270
Prci1g3276 295 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Prci1g3276 295 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Prci1g3276 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 294 IPR013087 -
Prci1g3276 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 255 IPR013087 -
Prci1g3276 295 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 255 - -
Prci1g3276 295 SUPERFAMILY AN1-like Zinc finger 4 54 IPR035896 -
Prci1g3276 295 Gene3D - 2 56 IPR035896 -
Prci1g3276 295 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3276 Prci-Chr1 50355829 50359089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3276 1 295 C2H2 Transcription Factor Family AT2G41835 60.339 1.04e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1g3276 zf-AN1 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3276 - - pcin:129293246 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3276 1 50355829 50359089 Prci1g3276 1 50355829 50359089 ECH