Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3268 ATGGCACTCAATACGCACAGGGTTTCCTTTTCCTTCTCTATGGTCGGGCCGTCTAGCCTGAGAAGAACCTCTTCTGCTTCCCACTTTGCTAGCCAACCATTTGGCCTTCCCTTTTCTTCCTCATCGCCCGTCAAACTGCCTTCGCAATTTGTTTCCAGGAACTCTAATTGCCGGCCCATCAAATGCTCCGTTTCTGAAGCTACAGAACCCAAGACTGAGAAGAAGAAACAGCAGGAGAGAAGAAGAGACATAAGAAACATAGCAATCGTAGCTCATGTTGATCATGGAAAAACAACTTTAGTTGATGCGATGCTGAAACAAACAAAGGTATTTCGTGATAATCAATTTATACAGGAAAGAATAATGGATTCAAATGATTTGGAGCGTGAAAGAGGAATCACAATACTAAGTAAAAATACATCTGTCACCTTTAAAGACACCAAGATTAATATAATAGATACTCCAGGTCACTCTGACTTCGGAGGTGAAGTGGAGCGCATCCTAAATATGGTGGAAGGAATCCTTTTAGTGGTAGATTCTGTTGAAGGTCCAATGCCACAAACAAGATTTGTTTTAAAGAAGGCCCTAGAGTTTGGGCATGCAGTTGTGGTTGTTGTCAATAAAATTGATAGACCATCTGCTCGGCCGGACTTTGTCATCAATTCTACTTTTGAGCTGTTTCTTGAACTAAATGCGTCGGATGAACAGTGTGACTTCCAAACAATATATGCTAGTGGCATAAAGGGACAAGCAGGACTATCTCCTGAAAATTTGGCAGAAGATCTTGGCCCATTGTTTGAAGCTATAATCAGATGTATCCCTGGACCACATATTGACAAAGATGGTGCACTGCAAATGCTTGCTACAAATATTGAGTACGATGAACATAAAGGGCGTATAGCGATTGGACGATTGCAAGCCGGAGTATTAGAAAGGGGCATGGATGTCAGGGTTTGTACAACTGAAGATTCATGTAGATTTGGGAGAATTAGTGAGCTTTTTGTGTATGACAAATTCAGTAGAGTCCCTGCAGACCGCGTGGAGGCTGGTGATATATGTGCTGTTTGTGGAATTGCTGATATTCAGGGAAAGTATGTCACTAGTAGGAACTTAAGGGATAGGCTCTATCGTGAGCTAGAGCGAAATTTGGCTATGAGAGTTGAAGATGGTGAAACAGCAGATACCTTTATTGTCAGTGGCCGTGGTACTTTGCACATAACCATACTCATAGAAAACATGCGAAGAGAAGGATATGAATTCATGGTAGGTCCTCCCAAGGTTATCAACAAGAAAGCAGGTGATCAATTGCTGGAACCATATGAGATTGCCACTGTGGAGGTACCAGAAGAACACATGGGGGCTGTTGTTGAACTTCTGGGCAAGAGGCGAGGGCAAATGTTCGATATGGAAGGAGTTGGATCGGAAGGAACTACCCTACTGAAATATAGGATTCCAACCCGTGGCCTTTTGGGATTGCGGAATTCTATCTTAACAGCTTCCCGTGGAACAGCAATTCTCAACACTCTCTTTGATAGCTATGGACCTTGGGCAGGGGACATCAGTACTCGGGATCAAGGCTCACTGGTTGCTTTTGAAGATGGAACAAGTACTTCTTATGCGCTTGCTAGTTCACAGGAGAGGGGACAGATGTTTATCCGTCCTGGAGTGGATGTTTACAAAGGTCAAATTGTTGGCATTCATCAGCGACCTGGGGATTTGGCCTTGAATGTTTGCAAGAAAAAAGCCGCAACAAACATACGTTCCAACAAGGAACAAACAGTGATTCTTGATACACCGATGGATTATAGTCTGGATGACTGCATCGAATACATCCAAGAAGATGAACTGGTAGAGGTCACTCCCCAAAGCATACGAATGTGCAAGAATCCCAAACTAGCAAAGAAAACAAGGTAG 1914 0.4321 MALNTHRVSFSFSMVGPSSLRRTSSASHFASQPFGLPFSSSSPVKLPSQFVSRNSNCRPIKCSVSEATEPKTEKKKQQERRRDIRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFIQERIMDSNDLERERGITILSKNTSVTFKDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDFVINSTFELFLELNASDEQCDFQTIYASGIKGQAGLSPENLAEDLGPLFEAIIRCIPGPHIDKDGALQMLATNIEYDEHKGRIAIGRLQAGVLERGMDVRVCTTEDSCRFGRISELFVYDKFSRVPADRVEAGDICAVCGIADIQGKYVTSRNLRDRLYRELERNLAMRVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKAGDQLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMEGVGSEGTTLLKYRIPTRGLLGLRNSILTASRGTAILNTLFDSYGPWAGDISTRDQGSLVAFEDGTSTSYALASSQERGQMFIRPGVDVYKGQIVGIHQRPGDLALNVCKKKAATNIRSNKEQTVILDTPMDYSLDDCIEYIQEDELVEVTPQSIRMCKNPKLAKKTR 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3268 637 Gene3D Elongation Factor G (Translational Gtpase), domain 3 360 629 - -
Prci1g3268 637 SMART EFG_C_a 435 524 IPR000640 -
Prci1g3268 637 CDD BipA_TypA_C 438 517 IPR035651 -
Prci1g3268 637 MobiDBLite consensus disorder prediction 62 81 - -
Prci1g3268 637 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 123 138 IPR031157 -
Prci1g3268 637 CDD BipA_TypA_II 284 362 IPR047042 -
Prci1g3268 637 Pfam Elongation factor G C-terminus 435 521 IPR000640 -
Prci1g3268 637 FunFam GTP-binding protein TypA 523 609 - -
Prci1g3268 637 Gene3D - 81 277 IPR027417 -
Prci1g3268 637 MobiDBLite consensus disorder prediction 67 81 - -
Prci1g3268 637 SUPERFAMILY Translation proteins 231 367 IPR009000 -
Prci1g3268 637 Pfam Elongation factor Tu GTP binding domain 83 274 IPR000795 GO:0003924|GO:0005525
Prci1g3268 637 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 268 361 - -
Prci1g3268 637 Gene3D bipa protein 523 602 IPR042116 -
Prci1g3268 637 PRINTS GTP-binding elongation factor signature 202 211 IPR000795 GO:0003924|GO:0005525
Prci1g3268 637 PRINTS GTP-binding elongation factor signature 130 138 IPR000795 GO:0003924|GO:0005525
Prci1g3268 637 PRINTS GTP-binding elongation factor signature 150 160 IPR000795 GO:0003924|GO:0005525
Prci1g3268 637 PRINTS GTP-binding elongation factor signature 86 99 IPR000795 GO:0003924|GO:0005525
Prci1g3268 637 SUPERFAMILY EF-G C-terminal domain-like 369 427 IPR035647 -
Prci1g3268 637 NCBIfam small GTP-binding protein domain 84 217 IPR005225 GO:0005525
Prci1g3268 637 Pfam Elongation factor Tu domain 2 298 361 IPR004161 GO:0005525
Prci1g3268 637 CDD TypA_BipA 83 276 IPR047041 -
Prci1g3268 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 285 IPR027417 -
Prci1g3268 637 FunFam GTP-binding protein TypA 81 277 - -
Prci1g3268 637 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 82 277 IPR000795 GO:0003924|GO:0005525
Prci1g3268 637 SUPERFAMILY EF-G C-terminal domain-like 438 553 IPR035647 -
Prci1g3268 637 Gene3D - 429 522 - -
Prci1g3268 637 FunFam GTP-binding protein TypA 429 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3268 Prci-Chr1 50290449 50298700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3268 82 211 Eukaryotic Initiation Factors Gene Family AT3G22980 43.182 1.29e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3268 K06207 - gmx:100785222 1065.83