Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3245 ATGGCTGACCCTTACTCTCATCTTTTCTCTTCTCCTCCTTTCTTCCAATTCAACCCTTTCCCTTCCTCCAACCCTTCTTCTCACCACCACCATCCCTATGCTCCTCTCCACAACTTCATCAACCACCCCTCCGCCACCTCCCCCGCCGGCTTTTTCAACCAACCCGCTTCTTGTTCTTCTTCCATCACACCTTCACCGCCGTCTCCTCCTCTCAGAGAAGCGCTCCCTCTCCTGAGCCTCAGCCCCTCCAGGCAAGACCACGATCATCCTCATCGTCCCGACCTGGACCGTGTCAGGGACGACGGGATCATCCTCCGCAGTGCTGCTAAACCCAAAGAGGAAGAATTAGAAGACGAAGAGGACGACGATGAGGCCACCGTCACTGTTGCACTCCACATAGGGTTGCCCAGCCCTAGTGCTGCTGAGATGGCTTCCGTGCTCTCCTCCTGCTCCAATGATAAACAACAGGAAGGGGAAGGAGATGGCGGCGGAGACGACGATTATTGTTCTGCCTCTGGCGGCTTCATGCTCCCCAATAAGCTCAACAAGGGACAGTACTGGATCCCTACTCCTTCTCAGATTCTTATCGGTCCTACCCAGTTCTCTTGCCCTGTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGGAAAGGGCCTGAATCGCTGAGAGGGACACAACCAACGGGCATGCTGAGGCTTCCGTGCTATTGTTGCGCTCCAGGTTGCAGAAACAACATCGACCACCCAAGAGCAAAGCCACTCAAGGATTTTAGAACACTTCAAACGCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCAGAAAATGTGGGAAGGCTTTTGCTGTCAGAGGGGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTCTGGTATTGTATCTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTCAAGGATCACATCAAAGCCTTCGGGGCTGGCCACGCTGCTTATGGGATCGATGGGTTTGAAGAAGAAGATGACCCTGCGTCCGAAGTGGAGCAAGATAACGAGTCCACCCAGTAA 1089 0.5271 MADPYSHLFSSPPFFQFNPFPSSNPSSHHHHPYAPLHNFINHPSATSPAGFFNQPASCSSSITPSPPSPPLREALPLLSLSPSRQDHDHPHRPDLDRVRDDGIILRSAAKPKEEELEDEEDDDEATVTVALHIGLPSPSAAEMASVLSSCSNDKQQEGEGDGGGDDDYCSASGGFMLPNKLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGAGHAAYGIDGFEEEDDPASEVEQDNESTQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3245 362 MobiDBLite consensus disorder prediction 142 156 - -
Prci1g3245 362 MobiDBLite consensus disorder prediction 81 102 - -
Prci1g3245 362 MobiDBLite consensus disorder prediction 84 102 - -
Prci1g3245 362 FunFam zinc finger protein WIP2-like 200 223 - -
Prci1g3245 362 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
Prci1g3245 362 SMART c2h2final6 201 223 IPR013087 -
Prci1g3245 362 SMART c2h2final6 285 305 IPR013087 -
Prci1g3245 362 Gene3D Classic Zinc Finger 263 337 - -
Prci1g3245 362 SUPERFAMILY beta-beta-alpha zinc fingers 267 305 IPR036236 -
Prci1g3245 362 MobiDBLite consensus disorder prediction 142 167 - -
Prci1g3245 362 Gene3D Classic Zinc Finger 200 223 - -
Prci1g3245 362 PANTHER ZINC FINGER PROTEIN WIP2 34 359 IPR043584 GO:0003700|GO:0010468
Prci1g3245 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 285 305 IPR013087 -
Prci1g3245 362 FunFam Zinc finger protein WIP2 254 336 - -
Prci1g3245 362 MobiDBLite consensus disorder prediction 56 75 - -
Prci1g3245 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 228 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3245 Prci-Chr1 50129747 50132243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3245 1 362 C2H2 Transcription Factor Family AT3G57670 63.171 8.67e-147 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1g3245 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3245 - - qsa:O6P43_010164 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3245 1 50129747 50132243 Prci3g2605 3 38759473 38762143 CCT
Prci1g3245 1 50129747 50132243 Prci1g3245 1 50129747 50132243 ECH